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2017-03-29Version ready to be merge with bottleneck distancepdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2281 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d47c6fe44885688b65a33481a1c27817a73d1b4a
2017-03-28Add commentvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2277 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2df390d8a87130a01fd3cae151e5a057ab85e049
2017-03-28Use only insert (simplex and subfaces)vrouvrea
Remove useless initialize_filtration git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2276 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: eed1a67e2f83e3a1945cc24b11454ed1ef024ba6
2017-03-28Missing a testvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2274 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 30330428b0071967367d1708338de0c7d40d8a67
2017-03-28Missing a test for cythonvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2272 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 223961ca5575e07d0db2c93ee0326864166980d8
2017-03-28deleting concretization folder. pdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2271 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c4330166bd9f70b2b39c4494728c85f972e3363c
2017-03-28Longer commentsglisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneck-glisse@2270 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fa5f87490ae2b94cbe6b4789001b0075f8a4726a
2017-03-28Before merging with a trunk.pdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2269 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4546accaf19b1d8d9c49d53ece4000b01ee4e811
2017-03-28Make Python interface compile, test and doc for Python2 and Python3vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2267 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f7397ecc5aba27ad4ecc794f4fbf5ca857847113
2017-03-28Different strategies to remove points from unmatched_in_u.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneck-glisse@2266 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5ff3d02d50ed3f1be537070d2c840f7ba4c6b433
2017-03-28Replace list with vector, save 30% of the running time...glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneck-glisse@2265 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 92ba2895af0715166924abdc1600f20665c76af4
2017-03-28Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2263 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9b430e79ecc94bee975d748eb3e2106c7dbab3ce
2017-03-28Replace some lists with vectors.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneck-glisse@2261 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 05dc215157f2a91c0d2150def3392e54af58ad21
2017-03-27Adding answers to Marc's comments.pdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2258 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4ad10b1ec977bb1fcfdab43c4d9ee9ed6ef120f5
2017-03-27cleanibng up the folder.pdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2257 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: be1967f952bad55cc24afc42f325df726d931594
2017-03-27adding persistence_representations subfolder (at the moment with all the junk).pdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2256 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fdf52ca688d992655ff139f42e316d5b7b3f8a12
2017-03-27Avoid copying Persistence_graph at the same time as Graph_matching.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneck-glisse@2255 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c3e494295aabd3647bf37e69f18c8537c5f04910
2017-03-27Use any neighbor near enough, not necessarily the closest.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneck-glisse@2254 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2b6776b10bbf565799a16472da4c35c72e63bb9c
2017-03-27Rename random_first_landmark to random_starting_point.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/farthest_distance@2250 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 953403f208094ca4145d837f736bfc939efa9223
2017-03-26Remove overload of choose_n_farthest_points.glisse
Use a named constant instead of -1 to denote a random value. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/farthest_distance@2245 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 166dff85c74ab2c13bfd788f226d1d8a15d1d1b9
2017-03-26merge from trunkglisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/farthest_distance@2244 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7d261d59dae839dd5de8f6a03c5a167d015f7d85
2017-03-24Merge cgal_4.8_issue branch into the trunkvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2242 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 094b70b4141e7456651263b1619240aff6a5d562
2017-03-24Workaround for CGAL version 4.8 compilation issuevrouvrea
New target CGAL_WITH_EIGEN3_VERSION set with CGAL_VERSION when CGAL and Eigen3 found to ease CMakeLists.txt git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cgal_4.8_issue@2241 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2fbf1f9397aa1549ba05aa26ac6852b882dce147
2017-03-24Answer to Marc's comments.pdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2240 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 20c02d536373553322a3e10eb4aacc2959db654a
2017-03-24Factorize third party management and extract them from CMakeLists.txtvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cgal_4.8_issue@2239 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6ed246b649418a623919b8b337ce366f5cc1d27f
2017-03-24cpplint fixvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2238 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 79b012972d91ce734cb3b11300ecf2e97eb2ea66
2017-03-24cpplint fixesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2237 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e320827b0f22160d6645f9ac89d7d7790964cf00
2017-03-24cpplint fixvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2236 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d3680e5085b858b2d5930179ca345f708688cbae
2017-03-24cpplint fixesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2233 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e82750380435d5f3e2972a65c5322ce268e4b559
2017-03-24cpplint fixesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2232 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ac02d5dd3b2aedd4795f775c228fe5ef7e1b3320
2017-03-24Merge rollback of bad warning fixesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2231 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6911213e51f96f4ae2319e8bec9b15140ba707ef
2017-03-24Fix cpplint on cython interfacesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2229 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 41a958b1be51ac938b45b384cde7940a85e9dea0
2017-03-23Rollback modifvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bad_warning_removal_rollback@2227 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5bd3fda973c28dfb5567abbd9cf23d9d4dc653b5
2017-03-23Merge ST_cythonize branch into the trunkvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2225 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 013d700aaa4b255cc91ff79020b40b7e6c4e7d05
2017-03-22Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2224 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 822ae367f4384a181f96498dfb4f354c433337ca
2017-03-22GudhUI CMakeLists.txt modifications. It is main CMakeLists.txt to find CGAL.vrouvrea
Was not compiling with CGAL 4.3 for instance. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2223 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 22b363c81cd69a296e1fc362eab0f5e5d171e402
2017-03-22make th same example as in C++vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2222 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c18c9aaeaab7005a7dc1471f7bff6acc94dad8d8
2017-03-22rename get_star functionvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2221 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fff57c25d175a6aed355efeb449f94a1af2249b3
2017-03-22Rename plot_persistence_diagram and barcodevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2220 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 66a06ffdc62d5284119df80c3f104a48568cd241
2017-03-22Interface insert_simplex and insert_simplex_and_subfaces in SimplexTreevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2217 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1e426a8cbcba192a50b05b5cc7fa4a0fd50d8c9b
2017-03-21Roll back bad modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2216 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 832a1770a18476c18e7ba75754c5ee89225eaf34
2017-03-21expansion method and its associated testvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2215 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 32ad429f301b35c064eadef36dbe4e7f64f6490e
2017-03-21Memory leaksvrouvrea
Landmarks initialization were not correct git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2213 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ab7e0adb6f36b2ccfd52a8c652c1ea35258a7aa1
2017-03-21Precise when to use set_dimension functionvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2212 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9e17d1b5e8a96fffe48e1b1e7b6d766d2abf33e0
2017-03-21Rename get_star_tree with get_starsvrouvrea
Rename Complex_tree typedef with Complex Typo in Rips doc for csv files for distance matrices git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2211 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a6be0ce66ef3c2c71ad43b328cebd673862a76d2
2017-03-20rename get_coface_tree with get_cofacesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2210 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c88576269982d87dd2dfd4003811628fee58dc2e
2017-03-20rename persistence function intervals_in_dim with ↵vrouvrea
persistence_intervals_in_dimension git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2209 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7991f11d249a2051d0cb6e7f453b1d6b7bcb7c36
2017-03-20using Base instead of full template class namevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2207 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3471adcb19df0859b5d905f5c5ba7e6e11ba2613
2017-03-20Rename barcode_persistence and diagram_persistence functionsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2204 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f91e283fa6b6b02198ae28a44f41bd761c1c1f48
2017-03-20constify interfacesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2203 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 55cf020d2a7989dc4e7125bcf6f91443aad4dda1
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