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2016-02-11A small change in sphere exampleskachano
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/witness@1015 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4c479a899c1a3686ac53a03affea63bc96208c7c
2016-02-09Finally, let CGAL set the flags, but before setting CXX_FLAGS with "-std=c++11"vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Win64_Boost_Xunit_fix@1011 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: faeca77f4eebf969e608b0c3be67893d646845a9
2016-02-09Adding documentation to the bitmap cubical complex with periodic boundary ↵pdlotko
conditions class. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bitmap@1010 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e1d9516f57be5e824203037b74998ed897741261
2016-02-09Doxygen fixesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bitmap@1009 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 490dcfd0ca24df97b9bf7735fa167ef844d49b71
2016-02-09adding missing partsypdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bitmap@1008 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f6de1ee4317763b50233f9a7212bdbf6587ee686
2016-02-08Adding changes suggested by Marc. pdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bitmap@1007 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2462c084e3269a3d44813619f44852d3c8d6e163
2016-02-05Merge of last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Win64_Boost_Xunit_fix@1005 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fd102773dade2672c47e27892782e7b29330f112
2016-02-05Over here I have linkd phat with Gudhi. So far it is done only for cubical ↵pdlotko
complexes, but since I am ONLY using Filtration_simplex_iterator, there should be no problem to have it run with any other class we have. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bitmap@1004 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ddb3e2c5fa0c2a816e7435c57d32c0644f8163d2
2016-02-04CMake strategy modificationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Win64_Boost_Xunit_fix@1003 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c917934525e020b54b2f4506b5c9d060a28c9d89
2016-02-04requires boost alsovrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Win64_Boost_Xunit_fix@1001 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: aca5ee1d5587d2e613691a539bb166ac592c137c
2016-02-04test with include CGAL_USE_FILE to fix windows issuevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Win64_Boost_Xunit_fix@1000 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 11a5fb78933306cfc83951174b38a03837fef58a
2016-02-03it is a simplex and not a simplex handlevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@999 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4bfc8fe6051480854acbd68fdb5c6f09624aa3da
2016-02-03Mentionning Delaunay complex in Alpha complex documentation (user and reference)vrouvrea
Specifying Alpha complex Kernel must be an Epick_d dD kernel (user and reference) git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@998 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b1a7a0cadd236bbfa6c529f2979ad2096414e207
2016-02-03make_filtration_non_decreasing and rec_make_filtration_non_decreasing must ↵vrouvrea
go through the tree in reverse mode (starting from the right part) git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@997 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0c8f8aeabd7dcba26971381c425ef7b0b417138c
2016-02-03Merge of AddressSanitizer bug fixesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@996 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 20e4b949af8e4481c13e8a91181fe772c696f01a
2016-02-02alpha off reader test strategy modificationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@995 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: aa4ba97eecefb03e01a53ae1e2b50248a0857043
2016-02-02landmark choice functions are now staticskachano
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/witness@994 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f83d337feab944e2c823b8e127f1a8d612d0a1bd
2016-02-02Make example for doc shorter. Include strategy reviewalvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@992 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 23d3e71d7d0fb4d649f73e53959626c5cbb0acd8
2016-02-02rename alpha_shapes_persistence test with alpha_complex_3d_persistencevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@991 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 455ee94450098bbcc000fb2ab2c4d39a326dea2c
2016-01-31remove creation of useless visitor for test that were just used for displaysalinasd
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_insert_with_subfaces_fix@990 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 13b3baec7f449d1d74cfaca2211571b468be1486
2016-01-21Warning fix - if not BOOST_CHECK, variable b_print_output seen as not used.vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/VR_witness@986 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 171f360b478c98edd9e177808e2c0b8410bfbd37
2016-01-21cpplint/cppcheck fixesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/VR_witness@985 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4dc15b3ab0eecb8d4f5bbb1ac1cb9dabf95233e4
2016-01-21cpplint fixesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/VR_witness@984 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c663c383e09719a8c70c1100bb6e21d8fc49e597
2016-01-20Almost all Vincent's remarksskachano
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/witness@982 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 32564e3521e0807e26bd2c07d682751a3d47e6da
2016-01-20Added the forgotten concept, added asserts nbP >= nbL, some header_definesskachano
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/witness@981 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d7c27be6bb66c79cf73971a80659079b1c8b12e5
2016-01-20Cmake witness fix for cmake in a build directory and 'make test' to work.vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/witness@980 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b3e08e5d5c04c4bc5fbc8a120332e2578cbbe586
2016-01-19Added a concept for Simplicial_complex, also added to doc about knnskachano
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/witness@979 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7d0a98369571ba5fc40196f41e74dd9d54b094ec
2016-01-19rollbackvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Win64_Boost_Xunit_fix@978 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6aeb45f999861185cda0d0961f22b4a08b413927
2016-01-19Try different values for xUnitvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Win64_Boost_Xunit_fix@977 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b3e39a4858a4be139236be0a87619164a35ea7c0
2016-01-19make_filtration_non_decreasing fixvrouvrea
Ut rewrite git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@974 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3326338b9454923b59d3e42add0f3530c6dbe16f
2016-01-15Added consts where neededskachano
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/witness@973 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 57ca40cd8dcda5125e4412c196862e14ff073744
2016-01-15make_filtration_non_decreasing fix.vrouvrea
Make it non decreasing for border and not only for parent. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@972 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e71f40baa56de53e68b02603b64fb504b1f5d978
2016-01-15Removed relaxed_witness_complex_sphere from repositoryskachano
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/witness@971 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 886ea9c52839e6cb21872da5097a55037b027ca7
2016-01-15Fixed namespacesskachano
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/witness@970 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f71d4840583611d3829d8c4f1049e5d2b01ce71d
2016-01-14Merged trunk to witness, because CMakeList in test is buggy :-(skachano
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/witness@969 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 84be8354f102538848f16935521fb7a30dc7e3de
2016-01-14Added example stuffskachano
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/witness@968 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a769b41f7d2d784a2740c149da08dac8124e3df9
2016-01-14AddressSanitizer bug fixes on Simplex tree copy constructor.vrouvrea
debug_tree function git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_insert_with_subfaces_fix@967 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: dd4b15dc8f2a4795d3a0b6fdcf4938aff152906b
2016-01-14Fixed the bug in Landmark_selection_by_furthest_pointskachano
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/witness@966 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: cbda37a8c267348800fe04e82c58c4021744292e
2016-01-13Oh, forgot the CMakeList in test folderskachano
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/witness@965 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d4a5301e5a48a27050bec9a43c35980a98d8837b
2016-01-13Added a test, moved the old test from exampleskachano
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/witness@964 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5744fdd3d30735cebdbd7442f023585a70bf0fca
2016-01-13Adding documentation of the class.pdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bitmap@963 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6eec3b7216880475ed667660275c2314bf0feb0c
2016-01-13Added tests for periodic boubnadry oconditions bitmap. pdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bitmap@962 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 49f059cdf9e0c8e20ff727564da13be14ebc2c04
2016-01-13First version of a code changed so that it computes persistence of cubical ↵pdlotko
complexes with or without periodic boundary conditions, but do not require duplication of code that link it to Gudhi persistence engine. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bitmap@961 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 506db0edd18818287fe110dcd04c15e369b28171
2016-01-12Backmerge of last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@959 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a5c6ef0ae2ee1e18fff88b98131ff4d14a252152
2016-01-12Remove test from gudhUI cmakevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@958 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1f77ce3d6bd85fceba2e0eeeacd559315d9c9d89
2016-01-12Fix alpha complex remarks and bugsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@957 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fa837fd1a4373c2322db16353d98767907f34c79
2016-01-08cpplint and cppcheck fixesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@956 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f54c0a2a375e8818c7162aec05249e446361834b
2016-01-08Adding a first vesion of a functionality that provide periodic boundary ↵pdlotko
codnitions. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bitmap@955 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ae60d98a6b2c15c2f7152663c3b05d40f0a56e86
2016-01-08tbb branch merge. Link with Intel TBB for parallel programmation.vrouvrea
Reduce persistence UT timings. Add parallel_rips_persistence compilatino and test. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@954 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4623c6a0c31d2b9574e2bb33836261fc26a89555
2016-01-07Backmerge from trunkvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/tbb@953 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 06624ae4ed4031c7bae56e0b8fa305a318b934bc
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