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2017-07-04Add Gudhi namespace for reader_utilsvrouvrea
Add confidence band in persistence_graphical_tools.py Persistence_diagram returns a plot that is no more showed. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_diagram_improvement@2582 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4125f4f525057e89c8b0d5d164ea0b9d1df1bd72
2017-07-03Rename cythonize_gudhi.py in setup.py to be conform with Python convention ↵vrouvrea
(for easy_install and pip) git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2578 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c514a7c5096293380254339e7e60782194040823
2017-06-28Add a commentvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2566 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 64cd59ca30ff82a1c116df20c4cee38a795dc518
2017-06-28Merge of branch boost_system_no_deprecated_test in order to :vrouvrea
- remove boost_system library dependency - repair conda package compilation issues found - Use Gudhi::Clock instead of boost::date_time library git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2565 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d68764ab186bd44f2b2253ba21ad1c0e09584455
2017-06-28Merge of the branch read_persistence_from_filevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2564 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b534b8866e25cf86db1483d141ac217c82b36384
2017-06-20Missing typedefcjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Spatial_searching-Add_radius_search@2556 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3354bb63d0839ae8377e9c11ef2a1168cce7dd20
2017-06-20Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Spatial_searching-Add_radius_search@2555 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3d0a3b2988bbbd0baa19fc09ba77e4e58e330a89
2017-06-16Fix auto lambda (requires C++14) compilation issuevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/read_persistence_from_file@2550 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: df64cfdde77500b06f00432a1d1532518cd4dd37
2017-06-16Fix CUSTOMBUILD : error : don't know how to set runtime library search path ↵vrouvrea
for MSVC git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/boost_system_no_deprecated_test@2549 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 94c7625b3bc8e943e3856e0e65dc65bb5d8cd0f7
2017-06-16Add warning about boost_thread link for the Mac GUDHI python modulevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/boost_system_no_deprecated_test@2548 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4a9f6c43f4868bd4f303579c22fdc7a54728e68c
2017-06-16Fix Python module version numervrouvrea
Fix link with external libraries git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/boost_system_no_deprecated_test@2547 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e2f47e860ea4608a4d298fa4772d750ac540be5a
2017-06-14Remove birth<=death check (should be done by the caller if necessary)cjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/read_persistence_from_file@2544 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ce50159f4bf779a2a42d357cf1c2aa290feaf9b9
2017-06-14Fix try vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/boost_system_no_deprecated_test@2543 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: da6eb0ef7b79c0d21d8e98d17d78459d1768a5db
2017-06-14Add traces for debugvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/boost_system_no_deprecated_test@2542 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a9e8098443114a4fe6e9c19e6410169580c134c6
2017-06-13Try to fix Windows compilation for Condavrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/boost_system_no_deprecated_test@2541 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: afa1b10e300aafbc92a85b3519f4b39add2ae6e4
2017-06-13This should never have been commented outcjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/read_persistence_from_file@2540 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5e5fc971986908e5b9383130704536686e1b66ea
2017-06-13Add header and namespace + remove unnecessary includecjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/read_persistence_from_file@2537 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fc2da43c18649c606ac4760a923684f9eef0c95e
2017-06-09Rewrite Contraction and Skeleton blocker time display using Gudhi::Clockvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/boost_system_no_deprecated_test@2535 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e2b5c1e152fd7bdca9d07db0390944409942ba53
2017-06-09Create a new page for file formatscjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/read_persistence_from_file@2534 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: dc0d836b9df68a3f339dcbc6b8ff51577faf3d7b
2017-06-09Throw exceptions if file not foundcjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/read_persistence_from_file@2533 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b412f432aeac6aef07ac2d9d65d50dc8f508c2e6
2017-06-09Missing "return"cjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/read_persistence_from_file@2532 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 8905e0d3406cbe26615b83ab7056e7fd5bd8ed0e
2017-06-09Change names and adapt examplecjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/read_persistence_from_file@2531 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 833a51dd03ddccca38c6011834bb58667d63ccbf
2017-06-09Homogenize DEFINE profiling name for subsamplingvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/boost_system_no_deprecated_test@2530 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 99176a6381a5c81298d94a781b996904ff2e1acc
2017-06-09Remove boost date_time dependenciesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/boost_system_no_deprecated_test@2529 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: daa13fc0046ffdd72577bb1b399fcbdc8ef5033c
2017-06-09Remove boost timer and chrono dependenciesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/boost_system_no_deprecated_test@2528 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5bfb8bd5a6e49dbea9fbfbdc1d748423fc930913
2017-06-09No more need of find_the_lib cmake macro to find Windows boost lib namevrouvrea
Fix cmake warning on if with quotes git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/boost_system_no_deprecated_test@2527 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a352820ab0a596961b9851d4a30c40196a70ff98
2017-06-09Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/boost_system_no_deprecated_test@2526 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 307d82b1c9be8629bdcb89d88e4e6d9deb1ade29
2017-06-09Tangential complex test must link with boost date time libraryvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/boost_system_no_deprecated_test@2525 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2f62d58f2915eead697ba5fbb02e69719f6e471a
2017-06-09Add BOOST_SYSTEM_NO_DEPRECATED definitionvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/boost_system_no_deprecated_test@2524 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4718264666a9289a46f282cfcf3200481966c0db
2017-06-08Add modules as CMake options in order to be able to activate/desactivate ↵vrouvrea
compilation git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cmake_modules_for_gudhi@2515 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 53d5e669ad310c9d8d17c7f95f1e07c3bf658d77
2017-06-02Fix install issuevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/boost_system_no_deprecated_test@2510 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c081183c9876761dace595a09ec04fe220846ed6
2017-06-02Get rid of Boost_system library linkvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/boost_system_no_deprecated_test@2509 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 52deba0f2212767b99b801810d356e55417225db
2017-06-02Try to remove boost systemvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/boost_system_no_deprecated_test@2504 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fd12c45af5ebeb72c4b49142abab91b46ce1a9da
2017-06-01Doc for "pers" file formatcjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/read_persistence_from_file@2500 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2da948fefffcb1961961e3111c89f400f23b65d3
2017-06-01Use make_function_output_iterator to avoid code duplicationcjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/read_persistence_from_file@2498 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7d9a9d3f72ef4af17f4a9b8263526df69498090c
2017-05-31Test bottleneck_read_file_examplecjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/read_persistence_from_file@2490 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: dbbce2ac4862dfdd3c01a619bf68120112ab44d5
2017-05-31Check if birth <= deathcjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/read_persistence_from_file@2488 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fc7aeca7ca7cd1ec2e9a9263849ec34d4dfa8414
2017-05-31Fix doccjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/read_persistence_from_file@2487 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7be9a5da2a64835ff7558373e7a754647bc5b663
2017-05-31Typocjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/read_persistence_from_file@2486 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: dcc6134d95dea816a3c54a2a796535f384ccfc54
2017-05-31Fix doc and shorten codecjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/read_persistence_from_file@2485 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 97dcd51c0dc9cef00a655e5e0ad078de752eabe8
2017-05-31Merge from trunkcjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/read_persistence_from_file@2482 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5487cc3f399d42f736ec008f40c4082d51e3f683
2017-05-30Clean-upcjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/read_persistence_from_file@2474 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9586b4987dad745fa60bca1a433349a2f78fa9bd
2017-05-30Remove debug codecjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/read_persistence_from_file@2473 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 458dcfcf18b36f8dd0023dfe5af0d6083d1c7684
2017-05-30Make install examples mechanismvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cmake_modules_for_gudhi@2467 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 018b6e55c392b37d02503e7822e0a586061c987d
2017-05-30Add a warningvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cmake_modules_for_gudhi@2465 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a873c9c6fff031968747c3dec197aec06738c32a
2017-05-29Add 2 new variants of read_persistence_diagram_from_filecjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/read_persistence_from_file@2463 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: bd0dd2c981856c8e1a51b2b97ac10d9edd59f694
2017-05-23read_persistence_diagram_from_file now uses an output iteratorcjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/read_persistence_from_file@2455 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3969666dcde3581a75789c5a4b62817dea553f9f
2017-05-19Move src/common/utilities/hypergenerator.cpp in src/common/utilitiesvrouvrea
Management of Python distribution packages make install is now installing utilities and GUDHI python module git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cmake_modules_for_gudhi@2453 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a85576c7ae062718900f0db2bfb0dd3f26e87177
2017-05-19Remove DEBUG_TRACEScjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/read_persistence_from_file@2446 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2290435a73db6bea9297fa79e10f7e36be10a43e
2017-05-18Modify the way cmake handles utilities, examples, test and benchmarks with ↵vrouvrea
new options to activate/desactivate them. Move hypergenerator as a common utility. Move random point generation from hypergenerator in src/common/include/gudhi/random_point_generators.h git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cmake_modules_for_gudhi@2442 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e2d13e4b0c09455fb604b684f6d71530352271eb
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