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2018-02-01typo in CMakeLists.txt + minor reformulation in doc.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/sparserips-glisse@3200 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: de115e83e56358fd3d283b802f16a2cc4f6db4f2
2018-01-31testglisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/sparserips-glisse@3196 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4fbf12d3a2adc56ee85a13fc35571de3963fee70
2018-01-31Add example.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/sparserips-glisse@3195 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b8ded704563c6794c098f9b80b1a5e0200e84694
2018-01-30Double all filtration values.glisse
It was using the Cech convention, not the Rips, so the Rips approximation was not close to the Rips, which is likely to confuse users. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/sparserips-glisse@3188 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7b948c956f39dc75931cb00a64516d08ff42e435
2018-01-30Compile and doc utilityglisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/sparserips-glisse@3187 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b9d1ff7172a9012dcca747c97b9367dc5a78800f
2018-01-26Bug in Persistent_cohomology: it computes H_1 for a 1-complex, while it does ↵glisse
not compute H_2 for a 2-complex. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/sparserips-glisse@3163 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0c027aa0c8f14e563ba1e707419b9dee1b84a610
2018-01-26doc for epsilonglisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/sparserips-glisse@3162 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 02ec0665d288e7e68959aa188cd291924a7d1c8f
2018-01-22Some general doc.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/sparserips-glisse@3146 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 8105c997b5541d0f3c8640e985de5d6810ab6be9
2018-01-16Initial commit of sparse Rips, based on Rips_complex.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/sparserips-glisse@3137 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f0550a0a24a25e8d9ab16535eb4364e8dc4228e6
2018-01-16Merge of branch misc-glissevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3135 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7b678c4b6accf796920ca9582fa57e13f5f1f8cb
2018-01-08Fix std::max Windows issuevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3120 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9aad5e17fb5b93b9b9054ce093dd54a56ca4b08a
2018-01-08Add include <iterator> for std::distancevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3119 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 92438c70043c4ee0d200b8906400b059d176196f
2018-01-08clang-format filesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3118 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c8371fc65da4f9912b602a4f3a6701661e46580e
2018-01-08Merge of branch persistence_representation_integration_cmake_improvementvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3117 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 673143bd16e06d990aeb104a506cfd71f91a8717
2018-01-08Merge of persistence_representations_fix_reading branch + clang format filesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3116 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0bae116ddc294d46e347d61fecc6e76b1e13f053
2018-01-07reading ug fixed. pdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_representations_fix_reading@3114 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b1476d1db101bc4c7377d9e5e34445ee6cd7cf9a
2017-12-22Prettify find_simplex().glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/misc-glisse@3105 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 34ce3d49fb8f9e64df8b492b2e9091e5e0ca6be4
2017-12-22Use contiguous_vertices in find_simplex().glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/misc-glisse@3104 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b8d7996b0c3a020d1b67003e4250e557c3cebee9
2017-12-22Cleanups in Euclidean_distance.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/misc-glisse@3102 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 06a14b11149e9c7265b8a3427404a9a0991d51aa
2017-12-22Comment pointing out where we use null_vertex.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/misc-glisse@3101 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b6fa96bd51ef95767c10310262951339f7971442
2017-12-22Check that user does not try to insert null_vertex in the complex.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/misc-glisse@3100 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b44cf48f810de029f3bd8c3a18cc8a9959c34bff
2017-12-21Code review fix : Bad cmake utility name, file read check, non negative ↵vrouvrea
weight check git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3095 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 09c0342e7c06f69b62f01c3ba8330a99b963399c
2017-12-20Merge 1_fold_cover_periodic_alpha_complexes branchvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3093 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 16709f47787220b4bb4a96936b211c932b03102d
2017-12-19Boost minimal version is 1.48.0 (modification rollback) - if boost_version ↵vrouvrea
use static_vector (from Boost 1.54.0) git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3090 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 487d902c645793f2647191a0d8f9218184fa19de
2017-12-19Fix unitary testsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_representation_integration_cmake_improvement@3088 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: db6f2e909552d643597925b312b7b50743924dfa
2017-12-19Fix test units vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_representation_integration_cmake_improvement@3086 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2d4ea393eb3d17ee7b60efc0f6c4c0531f21d451
2017-12-19Fix testsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_representation_integration_cmake_improvement@3084 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4fb56062184eeb07cbc7aa0c76803bb08daa0453
2017-12-19Add a function for unitary tests to test floating point values equality w/wo ↵vrouvrea
epsilon values git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_representation_integration_cmake_improvement@3083 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 835037fd6efea4fbfc9a494df3015186232388bf
2017-12-18Merge of ST-insert branchvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3082 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: efc5affb65a1c41d7d86247269cb3eef5e3e792c
2017-12-18Boost minimal version is now 1.56.0vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3081 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c3f409eb75ecb7a7f08735a99549c15662b7e5fe
2017-12-17Fix graph insertion.glisse
It currently ignores edge (i, j) with j<i, but nothing in the concept forbids such an edge. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/misc-glisse@3080 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 305f58b4995878da23b0fa07dc783c0bdceab6db
2017-12-17Hyperlink to boost concepts.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/misc-glisse@3079 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9ded02fd1e50098d8295c4f6e2b7a9a3adc4018f
2017-12-17Remove unused AdjacencyGraph requirement.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/misc-glisse@3078 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e7b92734bc7fbcaf070bd2439cb8aa6af3c2c8e1
2017-12-16Allow constant input in choose_n_farthest_points.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3075 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e3e6f9f0fe4e0cc0e4062984cc8ba08e99c1528f
2017-12-14Merge of branch misc-glissevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3074 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d0842416dbf4ee1ff25a7421841efe8f097e5379
2017-12-14Version numbersvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3073 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 38b84cada057e433d09aaf987b0d495e86e19962
2017-12-14Forgottenvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_representation_integration_cmake_improvement@3072 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7a6ef2d5fd72f53a396464bba4035f5610552c9b
2017-12-14Add cmake improvement for Persistence representation module.vrouvrea
Was bad tested and too hard to maintain git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_representation_integration_cmake_improvement@3071 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fa4684701edbe6d172e75f119afa912eb3b5dad7
2017-12-09Doc review: bad example link for euclidean strong witness Python examplevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3063 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 16af7cb7d034eb3ca17ecd037f97e6d4d44e3d54
2017-12-09CMake modification strategy as it was quite painful to maintain all these ↵vrouvrea
utilities git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_representation_integration_cmake_improvement@3062 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c0eae764abe5c7076ae59027eeab2a7ad451463c
2017-12-08File formats for iso cuboid and perseus in the Python versionvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3057 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6eb0a025d8549320e03727ce491563b2a941c82d
2017-12-06Fix precision error bugvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3047 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f1fb36cb9f658b53aaa5844c24eef404556003fd
2017-12-06Add traces for debugvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3046 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d9319e590a5e2acdec0c1bce0698ac32aeb857a2
2017-12-06Merge C++ version of persistence representationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_representation_integration_bis@3043 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6421c7cbe670fad1a8900ccc0ea6ff32297dd5e7
2017-12-06Merge add_utils_in_gudhi_v2 branch after 2nd round of reviewvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3041 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ad134cc2b6756e20afc8d9db9e40c5af87d09f9d
2017-12-06Fix cpplintvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3040 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 69ddae02dd1005b5ded5d4e0127a9eaa7081f5d6
2017-12-05Code review fix and std::size_tvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3039 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2ef03e413290c9f5ae0396a613b963d64e827a07
2017-12-05After fix code reviewvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3038 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 07971bb9211bdfd340c0525c12610bbcf3897951
2017-12-05Fix Perseus read file failed casesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3032 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 397a6316814d3214b0f39ab1249b48100fb995ee
2017-12-02Don't return 'const int', that's equivalent to int and causes a warning.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/misc-glisse@3018 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: bbefd89e01293f0d34645979318d745b683cd769