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2021-05-25Add a separator argument that goes with the ↵Hind-M
rips_complex_diagram_persistence_from_distance_matrix_file_example input file Specify explicitly the separator when using a specific input file
2021-05-21Fix issue #489 RipsComplex out of bounds accessHind-M
2021-05-05Merge pull request #488 from VincentRouvreau/numpy_minimal_versionVincent Rouvreau
numpy.take_along_axis used in knn requires numpy>=1.15.0
2021-05-04Set Simplex_tree_interface_full_featured constructor name (Simplex_tree) to ↵Hind Montassif
the class name
2021-05-03Merge pull request #484 from VincentRouvreau/doxygen_improvementVincent Rouvreau
Doxygen documentation improvement
2021-04-29numpy.take_along_axis used in knn requires numpy>=1.15.0ROUVREAU Vincent
2021-04-28update DoxyfileROUVREAU Vincent
2021-04-27Doxygen documentation improvementROUVREAU Vincent
2021-04-27Remove make install target from python and rewrite documentation accordinglyROUVREAU Vincent
2021-04-26Merge pull request #480 from Hind-M/replace_hardcoded_piVincent Rouvreau
Replace hardcoded PI with M_PI from cmath
2021-04-24Merge pull request #476 from mglisse/farMarc Glisse
Sparse Rips and choose_n_farthest_points, fix #456
2021-04-23Use double_constants instead of templated constantsHind
Use the boost double_constants namespace in each function that needs two_pi
2021-04-23Get pi constant from boost instead of cmath (to be replaced with the C++20 ↵Hind
standard one eventually)
2021-04-22Fix return type of source/targetMarc Glisse
2021-04-22Replace hardcoded PI with M_PI from cmathHind
2021-04-20Vertex_handle -> size_tMarc Glisse
2021-04-20Targeted include, more constMarc Glisse
2021-04-19Merge pull request #472 from mglisse/colorVincent Rouvreau
Fix contradictory color
2021-04-17Safely drop some vertices in sparse RipsMarc Glisse
2021-04-17Introduce a custom graph typeMarc Glisse
2021-04-17Don't qualify calls for the graph conceptMarc Glisse
2021-04-17Sparse Rips: disable `mini`, optimize a bit redundant pointsMarc Glisse
2021-04-17Rewrite choose_n_farthest_pointsMarc Glisse
Introduce an indirection to help with points with multiplicity. Limit the use of magic values like 0 and infinity.
2021-04-16Merge pull request #471 from Hind-M/cython_set_language_levelVincent Rouvreau
Set Cython language level in setup.py to remove warning, and fix python3 implicit relative imports disability
2021-04-15Merge pull request #474 from mglisse/cmplistMarc Glisse
Compare lists with ==
2021-04-15Name the argument n_neighbors of NearestNeighborsMarc Glisse
It seems that it has had the same name for a while, so this shouldn't break anything. sklearn/utils/validation.py:70: FutureWarning: Pass n_neighbors=3 as keyword args. From version 1.0 (renaming of 0.25) passing these as positional arguments will result in an error
2021-04-15Compare lists with ==Marc Glisse
numpy/core/_asarray.py:102: VisibleDeprecationWarning: Creating an ndarray from ragged nested sequences (which is a list-or-tuple of lists-or-tuples-or ndarrays with different lengths or shapes) is deprecated. If you meant to do this, you must specify 'dtype=object' when creating the ndarray.
2021-04-15Fix contradictory colorMarc Glisse
2021-04-15Set Cython language level to remove warningHind
2021-03-22Merge pull request #455 from VincentRouvreau/python_cmake_improvementsVincent Rouvreau
Python cmake improvements
2021-03-22Remove debug tracesROUVREAU Vincent
2021-03-22Env variables must be between double quotes for cmakeROUVREAU Vincent
2021-03-22debug traces for windowsROUVREAU Vincent
2021-03-09do not promote max_alpha_square use in examplesROUVREAU Vincent
2021-02-19Fix #454ROUVREAU Vincent
2021-02-19Revert "Partial fix of #416"ROUVREAU Vincent
This reverts commit 6c546aaa74679349dec98beef4f2c95f1d3b6055.
2021-02-19Partial fix of #416ROUVREAU Vincent
2021-01-11Ignore doctest for atol doc. Rewrite unitary test for atol doc. To be ↵ROUVREAU Vincent
synchronized
2021-01-11skip doctest (but run them)ROUVREAU Vincent
2021-01-11Remove sphinx doc test for atol as points order can be inverted and add it ↵ROUVREAU Vincent
in a UT but sorted
2021-01-11Split weighted alpha complex unit tests as it uses a lot of memory and make ↵ROUVREAU Vincent
the CI crash
2020-12-29Fix building with CGAL 5.2.Gard Spreemann
This is based on a similar fix for the alpha complex code.
2020-12-19Docstring improvements in RipsComplexUmberto Lupo
- create_simplex_tree method referred to the Delaunay triangulation instead of the flag complex - "rips" was not capitalized - "double" was used in the docs but only "float" (which has double precision) is a Python type
2020-12-14Fix sphinx error on Azure and AppveyorROUVREAU Vincent
2020-12-14Fix sphinx warning and doc identationROUVREAU Vincent
2020-12-12Merge pull request #436 from VincentRouvreau/ci_without_cgalVincent Rouvreau
Add build and tests wo cgal and eigen and wo cgal
2020-12-11code review: else branchROUVREAU Vincent
2020-12-11code review: throw an eception if collapse_edges when no Eigen3ROUVREAU Vincent
2020-12-11code review: GUDHI_USE_EIGEN3 generated by CMake in __init__.py as suggested ↵ROUVREAU Vincent
and roll back the other solution
2020-12-10Merge pull request #409 from mglisse/fardistMarc Glisse
Pass a distance function instead of a kernel to choose_n_farthest_points
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