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2022-05-23Merge branch 'master' of https://github.com/GUDHI/gudhi-devel into diffMathieuCarriere
2022-05-23updated output for cubical complexesMathieuCarriere
2022-05-23Merge pull request #619 from albert-github/feature/bug_persistent_linksVincent Rouvreau
Documentation: Non persistent links
2022-05-23[skip ci] example from a small moleculeVincent Rouvreau
2022-05-23[skip ci] example from a small moleculeVincent Rouvreau
2022-05-23[skip ci] example from a small moleculeVincent Rouvreau
Co-authored-by: Marc Glisse <marc.glisse@inria.fr>
2022-05-23Merge pull request #618 from albert-github/feature/bug_docu_redirectVincent Rouvreau
Documentation: Updating redirected links
2022-05-23Update src/common/doc/installation.hVincent Rouvreau
2022-05-23Update src/common/doc/installation.hVincent Rouvreau
Co-authored-by: Marc Glisse <marc.glisse@inria.fr>
2022-05-21Documentation: Non persistent linksalbert-github
During the link check we found some references to `#title..` in respect to links to CGAL, these links work at the moment but are, by CGAL, generated links during runtime based on the HTML `<H...>` tags. When a new paragraph or chapter is added these numbers will change and thus will the link point to the wrong place. All these items have also a more persistent reference anchor that is generated based on the `<name>` of the section (e.g. `\section <name> <description>`). Therefore it is better to used the references based on the `<name>`.
2022-05-20Documentation: Updating redirected linksalbert-github
Updating simple links in documentation sources for which we got during link checking: ``` This is a permanent redirect. The link should be updated. ```
2022-05-20issue #615 Documentation: references to boostalbert-github
Made references to boost so that they point to the last released version.
2022-05-20Merge branch 'master' of https://github.com/GUDHI/gudhi-devel into diffMathieuCarriere
2022-05-20Merge pull request #597 from ↵Vincent Rouvreau
VincentRouvreau/stree_iterator_boundary_and_opposite_vertex Boundary and its opposite vertex iterator for the simplex tree
2022-05-19Merge pull request #610 from albert-github/feature/bug_docu_returnVincent Rouvreau
Documentation: Warning about return statement
2022-05-19Documentation: Doxygen warningsalbert-github
Based on review corrected `EXAMPLE_PATH` and `CITE_BIB_FILES`.
2022-05-18Documentation: Warning about return statementalbert-github
When running doxygen over the sources we get the warnings like: ``` .../gudhi-devel/src/Skeleton_blocker/include/gudhi/Skeleton_blocker_complex.h:1073: warning: found documented return type for Gudhi::skeleton_blocker::Skeleton_blocker_complex::remove_popable_blockers that does not return anything ``` The functions are `void` functions so should not have a return value.
2022-05-18Documentation: Doxygen warningsalbert-github
When running doxygen on the sources we get (a.o.) the following warnings: ``` .../gudhi-devel/src/Contraction/include/gudhi/Edge_contraction.h:214: warning: unbalanced grouping commands .../gudhi-devel/src/common/doc/examples.h:3: warning: the name 'Examples' supplied as the argument in the \file statement is not an input file error: bib file .../gudhi-devel/biblio/how_to_cite_gudhi.bib not found! .../gudhi-devel/src/common/doc/installation.h:271: warning: included file biblio/how_to_cite_gudhi.bib is not found. Check your EXAMPLE_PATH ``` This is corrected in the different files and in the settings in src/Doxyfile.in Also there are a number of settings that are obsolete like: ``` warning: Tag 'LATEX_SOURCE_CODE' at line 1835 of file '.../gudhi-devel/build_windows_fork/Doxyfile' has become obsolete. ``` This is corrected in the src/Doxyfile.in file
2022-05-18Merge branch 'master' of https://github.com/GUDHI/gudhi-devel into diffMathieuCarriere
2022-05-17code review: test also the list of all oppposite vertices is the simplex ↵Vincent Rouvreau
given as an input
2022-05-17code review: test also range sizeVincent Rouvreau
2022-05-17Missed reference found by VincentMarc Glisse
2022-05-17Merge remote-tracking branch 'origin/master' into collapse-pr2Marc Glisse
2022-05-16code review: use isinstance(x, T) instead of issubclass(type(x),T)Vincent Rouvreau
2022-05-16code review: limit test was not respecting the one described in the ↵Vincent Rouvreau
documentation
2022-05-12Merge branch 'master' of https://github.com/GUDHI/gudhi-devel into diffMathieuCarriere
2022-05-10Fix limit tests for plot (and warning in test)Vincent Rouvreau
2022-05-09Merge pull request #504 from ↵Vincent Rouvreau
VincentRouvreau/persistence_graphical_tools_improvements Persistence graphical tools improvements
2022-04-29plot_persistence_diagram and plot_persistence_barcode improvementsVincent Rouvreau
2022-04-27Merge branch 'master' of https://github.com/GUDHI/gudhi-devel into diffMathieuCarriere
2022-04-27update doc + remove numpy/tensorflow mixupMathieuCarriere
2022-04-22Merge branch 'master' into stree_iterator_boundary_and_opposite_vertexVincent Rouvreau
2022-04-21Make Windows compilation fails on error (#598)Vincent Rouvreau
Use '-DEIGEN_DEFAULT_DENSE_INDEX_TYPE=int' as a workaround
2022-04-16fix testMathieuCarriere
2022-04-12doc review: accordingly to the review, replace the other places where it was ↵Vincent Rouvreau
also not well explained
2022-04-12code review: Add short cut for contiguous vertices incrementVincent Rouvreau
2022-04-12fix doc + reshape in cubicalMathieuCarriere
2022-04-12code review: remove unnecessary test of empty suffix_Vincent Rouvreau
2022-04-12identationVincent Rouvreau
2022-04-12doc review: i is from d to 0Vincent Rouvreau
2022-04-12doc reviewVincent Rouvreau
Co-authored-by: Marc Glisse <marc.glisse@inria.fr>
2022-04-12doc reviewVincent Rouvreau
Co-authored-by: Marc Glisse <marc.glisse@inria.fr>
2022-04-12Merge branch 'master' of https://github.com/GUDHI/gudhi-devel into diffMathieuCarriere
2022-04-11Merge pull request #596 from ↵Vincent Rouvreau
VincentRouvreau/float_relative_precision_alpha_python Float relative precision alpha python
2022-04-06code review: Rewrite warnings in case of import errorsVincent Rouvreau
2022-04-06Merge remote-tracking branch 'upstream/master' into ↵Vincent Rouvreau
persistence_graphical_tools_improvements
2022-04-05nogil for float_relative_precision methodsVincent Rouvreau
2022-04-05Boundary and its opposite vertex iterator for the simplex treeVincent Rouvreau
2022-04-03Merge branch 'master' of https://github.com/GUDHI/gudhi-devel into diffMathieuCarriere
2022-03-31code review: no need to nogil for cheap functions. Repeat ↵Vincent Rouvreau
get_float_relative_precision is only for safe mode
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