From c2d46e0e6cfea1927875219bd5e03962cef7b010 Mon Sep 17 00:00:00 2001 From: vrouvrea Date: Mon, 29 Jan 2018 16:31:18 +0000 Subject: Fix doc issue for utilities part on the web site git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3176 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3bafd9e13a5646ca93023144705d3ac7ed7c9b3a --- src/Nerve_GIC/utilities/covercomplex.md | 73 +++++++++++++++++++++++++++++++++ 1 file changed, 73 insertions(+) create mode 100644 src/Nerve_GIC/utilities/covercomplex.md (limited to 'src/Nerve_GIC/utilities/covercomplex.md') diff --git a/src/Nerve_GIC/utilities/covercomplex.md b/src/Nerve_GIC/utilities/covercomplex.md new file mode 100644 index 00000000..692e44e7 --- /dev/null +++ b/src/Nerve_GIC/utilities/covercomplex.md @@ -0,0 +1,73 @@ +--- +layout: page +title: "Cover complex" +meta_title: "covercomplex" +subheadline: "" +teaser: "" +permalink: "/covercomplex/" +--- +{::comment} +These flags above are here for web site generation, please let them. +cf. https://gitlab.inria.fr/GUDHI/website +Must be in conformity with _data/navigation.yml +{:/comment} + + + +## Nerve ## +This program builds the Nerve of a point cloud sampled on an OFF file. +The cover C comes from the preimages of intervals covering a coordinate function, +which are then refined into their connected components using the triangulation of the .OFF file. + +The program also writes a file SC.txt. +The first three lines in this file are the location of the input point cloud and the function used to compute the cover. +The fourth line contains the number of vertices nv and edges ne of the Nerve. The next nv lines represent the vertices. +Each line contains the vertex ID, the number of data points it contains, and their average color function value. +Finally, the next ne lines represent the edges, characterized by the ID of their vertices. + +**Usage** + +`Nerve coordinate resolution gain [--v]` + +where + +* `coordinate` is the coordinate function to cover +* `resolution` is the number of the intervals +* `gain` is the gain for each interval +* `--v` is optional, it activates verbose mode. + +**Example** + +`Nerve ../../data/points/human.off 2 10 0.3` + +* Builds the Nerve of a point cloud sampled on a 3D human shape (human.off). +The cover C comes from the preimages of intervals (10 intervals with gain 0.3) covering the height function (coordinate 2). + +`python KeplerMapperVisuFromTxtFile.py -f ../../data/points/human.off_sc.txt` + +* Constructs `human.off_sc.html` file. You can now use your favorite web browser to visualize it. + +## VoronoiGIC ## + +This util builds the Graph Induced Complex (GIC) of a point cloud. +It subsamples *N* points in the point cloud, which act as seeds of a geodesic Voronoï diagram. +Each cell of the diagram is then an element of C. + +The program also writes a file `*_sc.off`, that is an OFF file that can be visualized with GeomView. + +**Usage** + +`VoroniGIC samples_number [--v]` + +where + +* `samples_number` is the number of samples to take from the point cloud +* `--v` is optional, it activates verbose mode. + +**Example** + +`VoroniGIC ../../data/points/human.off 700` + +* Builds the Voronoi Graph Induced Complex with 700 subsamples from `human.off` file. +`../../data/points/human_sc.off` can be visualized with GeomView. + -- cgit v1.2.3 From b92ea601f15a239957ec6beba78ee2deee3d32d6 Mon Sep 17 00:00:00 2001 From: vrouvrea Date: Tue, 30 Jan 2018 08:54:00 +0000 Subject: Fix --v to -v for Cover complex git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3182 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 46e36af1a3e9aae8f1b12d2ee7fc749eb531f505 --- src/Nerve_GIC/doc/Intro_graph_induced_complex.h | 8 ++++---- src/Nerve_GIC/example/CoordGIC.cpp | 4 ++-- src/Nerve_GIC/example/FuncGIC.cpp | 4 ++-- src/Nerve_GIC/utilities/Nerve.cpp | 4 ++-- src/Nerve_GIC/utilities/VoronoiGIC.cpp | 4 ++-- src/Nerve_GIC/utilities/covercomplex.md | 8 ++++---- .../doc/Persistence_representations_doc.h | 2 +- 7 files changed, 17 insertions(+), 17 deletions(-) (limited to 'src/Nerve_GIC/utilities/covercomplex.md') diff --git a/src/Nerve_GIC/doc/Intro_graph_induced_complex.h b/src/Nerve_GIC/doc/Intro_graph_induced_complex.h index 474f0f0e..2b648425 100644 --- a/src/Nerve_GIC/doc/Intro_graph_induced_complex.h +++ b/src/Nerve_GIC/doc/Intro_graph_induced_complex.h @@ -70,7 +70,7 @@ namespace cover_complex { * * When launching: * - * \code $> ./Nerve ../../data/points/human.off 2 10 0.3 --v + * \code $> ./Nerve ../../data/points/human.off 2 10 0.3 -v * \endcode * * the program output is: @@ -113,7 +113,7 @@ namespace cover_complex { * * When launching: * - * \code $> ./VoronoiGIC ../../data/points/human.off 700 --v + * \code $> ./VoronoiGIC ../../data/points/human.off 700 -v * \endcode * * the program outputs SC.off. Using e.g. @@ -146,7 +146,7 @@ namespace cover_complex { * * When launching: * - * \code $> ./CoordGIC ../../data/points/KleinBottle5D.off 0 --v + * \code $> ./CoordGIC ../../data/points/KleinBottle5D.off 0 -v * \endcode * * the program outputs SC.dot. Using e.g. @@ -169,7 +169,7 @@ namespace cover_complex { * * When launching: * - * \code $> ./FuncGIC ../../data/points/COIL_database/lucky_cat.off ../../data/points/COIL_database/lucky_cat_PCA1 --v + * \code $> ./FuncGIC ../../data/points/COIL_database/lucky_cat.off ../../data/points/COIL_database/lucky_cat_PCA1 -v * \endcode * * the program outputs again SC.dot which gives the following visualization after using neato: diff --git a/src/Nerve_GIC/example/CoordGIC.cpp b/src/Nerve_GIC/example/CoordGIC.cpp index c03fcbb3..c92cf235 100644 --- a/src/Nerve_GIC/example/CoordGIC.cpp +++ b/src/Nerve_GIC/example/CoordGIC.cpp @@ -27,8 +27,8 @@ void usage(int nbArgs, char *const progName) { std::cerr << "Error: Number of arguments (" << nbArgs << ") is not correct\n"; - std::cerr << "Usage: " << progName << " filename.off coordinate [--v] \n"; - std::cerr << " i.e.: " << progName << " ../../data/points/human.off 2 --v \n"; + std::cerr << "Usage: " << progName << " filename.off coordinate [-v] \n"; + std::cerr << " i.e.: " << progName << " ../../data/points/human.off 2 -v \n"; exit(-1); // ----- >> } diff --git a/src/Nerve_GIC/example/FuncGIC.cpp b/src/Nerve_GIC/example/FuncGIC.cpp index 3762db4e..cb0f0d63 100644 --- a/src/Nerve_GIC/example/FuncGIC.cpp +++ b/src/Nerve_GIC/example/FuncGIC.cpp @@ -27,9 +27,9 @@ void usage(int nbArgs, char *const progName) { std::cerr << "Error: Number of arguments (" << nbArgs << ") is not correct\n"; - std::cerr << "Usage: " << progName << " filename.off function [--v] \n"; + std::cerr << "Usage: " << progName << " filename.off function [-v] \n"; std::cerr << " i.e.: " << progName << " ../../data/points/COIL_database/lucky_cat.off " - "../../data/points/COIL_database/lucky_cat_PCA1 --v \n"; + "../../data/points/COIL_database/lucky_cat_PCA1 -v \n"; exit(-1); // ----- >> } diff --git a/src/Nerve_GIC/utilities/Nerve.cpp b/src/Nerve_GIC/utilities/Nerve.cpp index 6abdedc7..aefc3874 100644 --- a/src/Nerve_GIC/utilities/Nerve.cpp +++ b/src/Nerve_GIC/utilities/Nerve.cpp @@ -27,8 +27,8 @@ void usage(int nbArgs, char *const progName) { std::cerr << "Error: Number of arguments (" << nbArgs << ") is not correct\n"; - std::cerr << "Usage: " << progName << " filename.off coordinate resolution gain [--v] \n"; - std::cerr << " i.e.: " << progName << " ../../data/points/human.off 2 10 0.3 --v \n"; + std::cerr << "Usage: " << progName << " filename.off coordinate resolution gain [-v] \n"; + std::cerr << " i.e.: " << progName << " ../../data/points/human.off 2 10 0.3 -v \n"; exit(-1); // ----- >> } diff --git a/src/Nerve_GIC/utilities/VoronoiGIC.cpp b/src/Nerve_GIC/utilities/VoronoiGIC.cpp index 32431cc2..54bb871e 100644 --- a/src/Nerve_GIC/utilities/VoronoiGIC.cpp +++ b/src/Nerve_GIC/utilities/VoronoiGIC.cpp @@ -27,8 +27,8 @@ void usage(int nbArgs, char *const progName) { std::cerr << "Error: Number of arguments (" << nbArgs << ") is not correct\n"; - std::cerr << "Usage: " << progName << " filename.off N [--v] \n"; - std::cerr << " i.e.: " << progName << " ../../data/points/human.off 100 --v \n"; + std::cerr << "Usage: " << progName << " filename.off N [-v] \n"; + std::cerr << " i.e.: " << progName << " ../../data/points/human.off 100 -v \n"; exit(-1); // ----- >> } diff --git a/src/Nerve_GIC/utilities/covercomplex.md b/src/Nerve_GIC/utilities/covercomplex.md index 692e44e7..41489b66 100644 --- a/src/Nerve_GIC/utilities/covercomplex.md +++ b/src/Nerve_GIC/utilities/covercomplex.md @@ -27,14 +27,14 @@ Finally, the next ne lines represent the edges, characterized by the ID of their **Usage** -`Nerve coordinate resolution gain [--v]` +`Nerve coordinate resolution gain [-v]` where * `coordinate` is the coordinate function to cover * `resolution` is the number of the intervals * `gain` is the gain for each interval -* `--v` is optional, it activates verbose mode. +* `-v` is optional, it activates verbose mode. **Example** @@ -57,12 +57,12 @@ The program also writes a file `*_sc.off`, that is an OFF file that can be visua **Usage** -`VoroniGIC samples_number [--v]` +`VoroniGIC samples_number [-v]` where * `samples_number` is the number of samples to take from the point cloud -* `--v` is optional, it activates verbose mode. +* `-v` is optional, it activates verbose mode. **Example** diff --git a/src/Persistence_representations/doc/Persistence_representations_doc.h b/src/Persistence_representations/doc/Persistence_representations_doc.h index d781211a..38bd3a21 100644 --- a/src/Persistence_representations/doc/Persistence_representations_doc.h +++ b/src/Persistence_representations/doc/Persistence_representations_doc.h @@ -67,7 +67,7 @@ namespace Persistence_representations { \li Concept of representation of persistence that allows computations of distances. \li Concept of representation of persistence that allows computations of scalar products. \li Concept of representation of persistence that allows vectorization. - \li Concept of representation of persistence that allows computations of real--valued characteristics of objects. + \li Concept of representation of persistence that allows computations of real-valued characteristics of objects. At the moment an implementation of the following representations of persistence are available (further details of -- cgit v1.2.3 From 37ded65d83935d417fc3bc484594a83b36f63514 Mon Sep 17 00:00:00 2001 From: vrouvrea Date: Tue, 30 Jan 2018 17:05:03 +0000 Subject: Fix after web review git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3189 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fd42bab9b27a3c086adeaf75068c83a911ede000 --- src/Alpha_complex/utilities/alphacomplex.md | 100 +++++++++------------ .../utilities/cubicalcomplex.md | 17 +--- .../utilities/bottleneckdistance.md | 16 +--- src/Nerve_GIC/utilities/covercomplex.md | 15 +--- src/Rips_complex/utilities/ripscomplex.md | 16 +--- src/Witness_complex/utilities/witnesscomplex.md | 22 ++--- src/common/utilities/pointsetgenerator.md | 16 +--- 7 files changed, 62 insertions(+), 140 deletions(-) (limited to 'src/Nerve_GIC/utilities/covercomplex.md') diff --git a/src/Alpha_complex/utilities/alphacomplex.md b/src/Alpha_complex/utilities/alphacomplex.md index 0e500e53..aace85d3 100644 --- a/src/Alpha_complex/utilities/alphacomplex.md +++ b/src/Alpha_complex/utilities/alphacomplex.md @@ -1,18 +1,47 @@ ---- -layout: page -title: "Alpha complex" -meta_title: "alphacomplex" -subheadline: "" -teaser: "" -permalink: "/alphacomplex/" ---- -{::comment} -These flags above are here for web site generation, please let them. -cf. https://gitlab.inria.fr/GUDHI/website -Must be in conformity with _data/navigation.yml -{:/comment} +# Alpha complex # + + +## alpha_complex_persistence ## + +This program computes the persistent homology with coefficient field Z/pZ of the dD alpha complex built from a dD point cloud. +The output diagram contains one bar per line, written with the convention: + +``` + p dim birth death +``` + +where `dim` is the dimension of the homological feature, `birth` and `death` are respectively the birth and death of the feature, +and `p` is the characteristic of the field *Z/pZ* used for homology coefficients (`p` must be a prime number). + +**Usage** + +``` + alpha_complex_persistence [options] +``` + +where +`` is the path to the input point cloud in [nOFF ASCII format](http://www.geomview.org/docs/html/OFF.html). + +**Allowed options** + +* `-h [ --help ]` Produce help message +* `-o [ --output-file ]` Name of file in which the persistence diagram is written. Default print in standard output. +* `-r [ --max-alpha-square-value ]` (default = inf) Maximal alpha square value for the Alpha complex construction. +* `-p [ --field-charac ]` (default = 11) Characteristic p of the coefficient field Z/pZ for computing homology. +* `-m [ --min-persistence ]` (default = 0) Minimal lifetime of homology feature to be recorded. Enter a negative value to see zero length intervals. + +**Example** + +``` + alpha_complex_persistence -r 32 -p 2 -m 0.45 ../../data/points/tore3D_300.off +``` + +N.B.: + +* Filtration values are alpha square values. + ## alpha_complex_3d_persistence ## This program computes the persistent homology with coefficient field Z/pZ of the 3D alpha complex built from a 3D point cloud. The output diagram contains one bar per line, written with the convention: @@ -107,7 +136,7 @@ where * `` is the path to the input point cloud in [nOFF ASCII format](http://www.geomview.org/docs/html/OFF.html). * `` is the path to the file describing the periodic domain. It must be in the format described -[here](../doc/latest/fileformats.html#FileFormatsIsoCuboid). +[here](/doc/latest/fileformats.html#FileFormatsIsoCuboid). **Allowed options** @@ -125,46 +154,5 @@ periodic_alpha_complex_3d_persistence ../../data/points/grid_10_10_10_in_0_1.off N.B.: -* Cuboid file must be in the format described [here](../doc/latest/fileformats.html#FileFormatsIsoCuboid). -* Filtration values are alpha square values. - - - -## alpha_complex_persistence ## - -This program computes the persistent homology with coefficient field Z/pZ of the dD alpha complex built from a dD point cloud. -The output diagram contains one bar per line, written with the convention: - -``` - p dim birth death -``` - -where `dim` is the dimension of the homological feature, `birth` and `death` are respectively the birth and death of the feature, -and `p` is the characteristic of the field *Z/pZ* used for homology coefficients (`p` must be a prime number). - -**Usage** - -``` - alpha_complex_persistence [options] -``` - -where -`` is the path to the input point cloud in [nOFF ASCII format](http://www.geomview.org/docs/html/OFF.html). - -**Allowed options** - -* `-h [ --help ]` Produce help message -* `-o [ --output-file ]` Name of file in which the persistence diagram is written. Default print in standard output. -* `-r [ --max-alpha-square-value ]` (default = inf) Maximal alpha square value for the Alpha complex construction. -* `-p [ --field-charac ]` (default = 11) Characteristic p of the coefficient field Z/pZ for computing homology. -* `-m [ --min-persistence ]` (default = 0) Minimal lifetime of homology feature to be recorded. Enter a negative value to see zero length intervals. - -**Example** - -``` - alpha_complex_persistence -r 32 -p 2 -m 0.45 ../../data/points/tore3D_300.off -``` - -N.B.: - +* Cuboid file must be in the format described [here](/doc/latest/fileformats.html#FileFormatsIsoCuboid). * Filtration values are alpha square values. diff --git a/src/Bitmap_cubical_complex/utilities/cubicalcomplex.md b/src/Bitmap_cubical_complex/utilities/cubicalcomplex.md index 3a9e6aac..6e1b2578 100644 --- a/src/Bitmap_cubical_complex/utilities/cubicalcomplex.md +++ b/src/Bitmap_cubical_complex/utilities/cubicalcomplex.md @@ -1,21 +1,10 @@ ---- -layout: page -title: "Bitmap cubical complex" -meta_title: "cubicalcomplex" -subheadline: "" -teaser: "" -permalink: "/cubicalcomplex/" ---- -{::comment} -These flags above are here for web site generation, please let them. -cf. https://gitlab.inria.fr/GUDHI/website -Must be in conformity with _data/navigation.yml -{:/comment} +# Cubical complex# + ## cubical_complex_persistence ## This program computes persistent homology, by using the Bitmap_cubical_complex class, of cubical complexes provided in text files in Perseus style. -See [here](../doc/latest/fileformats.html#FileFormatsPerseus) for a description of the file format. +See [here](/doc/latest/fileformats.html#FileFormatsPerseus) for a description of the file format. **Example** diff --git a/src/Bottleneck_distance/utilities/bottleneckdistance.md b/src/Bottleneck_distance/utilities/bottleneckdistance.md index e9079058..526f5822 100644 --- a/src/Bottleneck_distance/utilities/bottleneckdistance.md +++ b/src/Bottleneck_distance/utilities/bottleneckdistance.md @@ -1,18 +1,6 @@ ---- -layout: page -title: "Bottleneck distance" -meta_title: "bottleneckdistance" -subheadline: "" -teaser: "" -permalink: "/bottleneckdistance/" ---- -{::comment} -These flags above are here for web site generation, please let them. -cf. https://gitlab.inria.fr/GUDHI/website -Must be in conformity with _data/navigation.yml -{:/comment} +# Bottleneck distance # ## bottleneck_read_file_example ## @@ -26,5 +14,5 @@ This program computes the Bottleneck distance between two persistence diagram fi where -* `` and `` must be in the format described [here](../doc/latest/fileformats.html#FileFormatsPers). +* `` and `` must be in the format described [here](/doc/latest/fileformats.html#FileFormatsPers). * `` is an error bound on the bottleneck distance (set by default to the smallest positive double value). diff --git a/src/Nerve_GIC/utilities/covercomplex.md b/src/Nerve_GIC/utilities/covercomplex.md index 41489b66..f33cb2e0 100644 --- a/src/Nerve_GIC/utilities/covercomplex.md +++ b/src/Nerve_GIC/utilities/covercomplex.md @@ -1,18 +1,7 @@ ---- -layout: page -title: "Cover complex" -meta_title: "covercomplex" -subheadline: "" -teaser: "" -permalink: "/covercomplex/" ---- -{::comment} -These flags above are here for web site generation, please let them. -cf. https://gitlab.inria.fr/GUDHI/website -Must be in conformity with _data/navigation.yml -{:/comment} +# Cover complex # + ## Nerve ## This program builds the Nerve of a point cloud sampled on an OFF file. diff --git a/src/Rips_complex/utilities/ripscomplex.md b/src/Rips_complex/utilities/ripscomplex.md index 44a37543..4291fae7 100644 --- a/src/Rips_complex/utilities/ripscomplex.md +++ b/src/Rips_complex/utilities/ripscomplex.md @@ -1,21 +1,9 @@ ---- -layout: page -title: "Rips complex" -meta_title: "ripscomplex" -subheadline: "" -teaser: "" -permalink: "/ripscomplex/" ---- -{::comment} -These flags above are here for web site generation, please let them. -cf. https://gitlab.inria.fr/GUDHI/website -Must be in conformity with _data/navigation.yml -{:/comment} +# Rips complex # ## rips_persistence ## -This program computes the persistent homology with coefficient field *Z/pZ* of a Rips complex defined on a set of input points. The output diagram contains one bar per line, written with the convention: +This program computes the persistent homology with coefficient field *Z/pZ* of a Rips complex defined on a set of input points, using Euclidean distance. The output diagram contains one bar per line, written with the convention: `p dim birth death` diff --git a/src/Witness_complex/utilities/witnesscomplex.md b/src/Witness_complex/utilities/witnesscomplex.md index 40864871..2341759b 100644 --- a/src/Witness_complex/utilities/witnesscomplex.md +++ b/src/Witness_complex/utilities/witnesscomplex.md @@ -1,19 +1,9 @@ ---- -layout: page -title: "Witness complex" -meta_title: "witnesscomplex" -subheadline: "" -teaser: "" -permalink: "/witnesscomplex/" ---- -{::comment} -These flags above are here for web site generation, please let them. -cf. https://gitlab.inria.fr/GUDHI/website -Must be in conformity with _data/navigation.yml -{:/comment} - - -For more details about the witness complex, please read the [user manual of the package](../doc/latest/group__witness__complex.html). + + +# Witness complex # + + +For more details about the witness complex, please read the [user manual of the package](/doc/latest/group__witness__complex.html). ## weak_witness_persistence ## This program computes the persistent homology with coefficient field *Z/pZ* of a Weak witness complex defined on a set of input points. diff --git a/src/common/utilities/pointsetgenerator.md b/src/common/utilities/pointsetgenerator.md index f39c63b8..284715d4 100644 --- a/src/common/utilities/pointsetgenerator.md +++ b/src/common/utilities/pointsetgenerator.md @@ -1,16 +1,6 @@ ---- -layout: page -title: "Pointset generator" -meta_title: "pointsetgenerator" -subheadline: "" -teaser: "" -permalink: "/pointsetgenerator/" ---- -{::comment} -These flags above are here for web site generation, please let them. -cf. https://gitlab.inria.fr/GUDHI/website -Must be in conformity with _data/navigation.yml -{:/comment} + + +# common # ## off_file_from_shape_generator ## -- cgit v1.2.3 From b77699a3188d6674427cffaa35f26ec57aadec8b Mon Sep 17 00:00:00 2001 From: vrouvrea Date: Thu, 8 Mar 2018 17:13:25 +0000 Subject: Web site review after Editorial Board Do not need to import gudhi twice in py git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3270 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7d7a4bba27f4cbcad5f8b18cb86587a15e6a8435 --- src/Alpha_complex/utilities/alphacomplex.md | 10 ++++++++++ src/Bitmap_cubical_complex/utilities/cubicalcomplex.md | 10 ++++++++++ src/Bottleneck_distance/utilities/bottleneckdistance.md | 10 ++++++++++ src/Nerve_GIC/utilities/covercomplex.md | 10 ++++++++++ src/Rips_complex/utilities/ripscomplex.md | 10 ++++++++++ src/Witness_complex/utilities/witnesscomplex.md | 10 ++++++++++ src/common/utilities/pointsetgenerator.md | 16 +++++++++++++--- src/cython/example/bottleneck_basic_example.py | 2 -- 8 files changed, 73 insertions(+), 5 deletions(-) (limited to 'src/Nerve_GIC/utilities/covercomplex.md') diff --git a/src/Alpha_complex/utilities/alphacomplex.md b/src/Alpha_complex/utilities/alphacomplex.md index aace85d3..ede749a9 100644 --- a/src/Alpha_complex/utilities/alphacomplex.md +++ b/src/Alpha_complex/utilities/alphacomplex.md @@ -1,3 +1,13 @@ +--- +layout: page +title: "Alpha complex" +meta_title: "Alpha complex" +teaser: "" +permalink: /alphacomplex/ +--- +{::comment} +Leave the lines above as it is required by the web site generator 'Jekyll' +{:/comment} # Alpha complex # diff --git a/src/Bitmap_cubical_complex/utilities/cubicalcomplex.md b/src/Bitmap_cubical_complex/utilities/cubicalcomplex.md index 6e1b2578..a1bb9007 100644 --- a/src/Bitmap_cubical_complex/utilities/cubicalcomplex.md +++ b/src/Bitmap_cubical_complex/utilities/cubicalcomplex.md @@ -1,3 +1,13 @@ +--- +layout: page +title: "Cubical complex" +meta_title: "Cubical complex" +teaser: "" +permalink: /cubicalcomplex/ +--- +{::comment} +Leave the lines above as it is required by the web site generator 'Jekyll' +{:/comment} # Cubical complex# diff --git a/src/Bottleneck_distance/utilities/bottleneckdistance.md b/src/Bottleneck_distance/utilities/bottleneckdistance.md index 526f5822..f2749acc 100644 --- a/src/Bottleneck_distance/utilities/bottleneckdistance.md +++ b/src/Bottleneck_distance/utilities/bottleneckdistance.md @@ -1,3 +1,13 @@ +--- +layout: page +title: "Bottleneck distance" +meta_title: "Bottleneck distance" +teaser: "" +permalink: /bottleneckdistance/ +--- +{::comment} +Leave the lines above as it is required by the web site generator 'Jekyll' +{:/comment} # Bottleneck distance # diff --git a/src/Nerve_GIC/utilities/covercomplex.md b/src/Nerve_GIC/utilities/covercomplex.md index f33cb2e0..6d16d16f 100644 --- a/src/Nerve_GIC/utilities/covercomplex.md +++ b/src/Nerve_GIC/utilities/covercomplex.md @@ -1,3 +1,13 @@ +--- +layout: page +title: "Cover complex" +meta_title: "Cover complex" +teaser: "" +permalink: /covercomplex/ +--- +{::comment} +Leave the lines above as it is required by the web site generator 'Jekyll' +{:/comment} # Cover complex # diff --git a/src/Rips_complex/utilities/ripscomplex.md b/src/Rips_complex/utilities/ripscomplex.md index 4291fae7..c1f2210e 100644 --- a/src/Rips_complex/utilities/ripscomplex.md +++ b/src/Rips_complex/utilities/ripscomplex.md @@ -1,3 +1,13 @@ +--- +layout: page +title: "Rips complex" +meta_title: "Rips complex" +teaser: "" +permalink: /ripscomplex/ +--- +{::comment} +Leave the lines above as it is required by the web site generator 'Jekyll' +{:/comment} # Rips complex # diff --git a/src/Witness_complex/utilities/witnesscomplex.md b/src/Witness_complex/utilities/witnesscomplex.md index 2341759b..3be9bc55 100644 --- a/src/Witness_complex/utilities/witnesscomplex.md +++ b/src/Witness_complex/utilities/witnesscomplex.md @@ -1,3 +1,13 @@ +--- +layout: page +title: "Witness complex" +meta_title: "Witness complex" +teaser: "" +permalink: /witnesscomplex/ +--- +{::comment} +Leave the lines above as it is required by the web site generator 'Jekyll' +{:/comment} # Witness complex # diff --git a/src/common/utilities/pointsetgenerator.md b/src/common/utilities/pointsetgenerator.md index 284715d4..3b23e668 100644 --- a/src/common/utilities/pointsetgenerator.md +++ b/src/common/utilities/pointsetgenerator.md @@ -1,6 +1,16 @@ - - -# common # +--- +layout: page +title: "OFF point set generator" +meta_title: "OFF point set generator" +teaser: "" +permalink: /pointsetgenerator/ +--- +{::comment} +Leave the lines above as it is required by the web site generator 'Jekyll' +{:/comment} + + +# Miscellaneous # ## off_file_from_shape_generator ## diff --git a/src/cython/example/bottleneck_basic_example.py b/src/cython/example/bottleneck_basic_example.py index 31cecb29..a7fa01c1 100755 --- a/src/cython/example/bottleneck_basic_example.py +++ b/src/cython/example/bottleneck_basic_example.py @@ -28,8 +28,6 @@ __author__ = "Francois Godi, Vincent Rouvreau" __copyright__ = "Copyright (C) 2016 INRIA" __license__ = "GPL v3" -import gudhi - diag1 = [[2.7, 3.7],[9.6, 14.],[34.2, 34.974], [3.,float('Inf')]] diag2 = [[2.8, 4.45],[9.5, 14.1],[3.2,float('Inf')]] -- cgit v1.2.3 From d9b4497284de73f14387a170388bf8bcd4207436 Mon Sep 17 00:00:00 2001 From: vrouvrea Date: Wed, 4 Apr 2018 09:12:15 +0000 Subject: No need to repeat title, automatically done by the website git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3338 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 51d295377d2b3235e9316f199bf95d3c5aeaeab3 --- src/Alpha_complex/utilities/alphacomplex.md | 3 --- src/Bitmap_cubical_complex/utilities/cubicalcomplex.md | 2 -- src/Bottleneck_distance/utilities/bottleneckdistance.md | 2 -- src/Nerve_GIC/utilities/covercomplex.md | 3 --- src/Rips_complex/utilities/ripscomplex.md | 2 -- src/Witness_complex/utilities/witnesscomplex.md | 3 --- src/common/utilities/pointsetgenerator.md | 4 ---- 7 files changed, 19 deletions(-) (limited to 'src/Nerve_GIC/utilities/covercomplex.md') diff --git a/src/Alpha_complex/utilities/alphacomplex.md b/src/Alpha_complex/utilities/alphacomplex.md index ede749a9..0fe98837 100644 --- a/src/Alpha_complex/utilities/alphacomplex.md +++ b/src/Alpha_complex/utilities/alphacomplex.md @@ -10,9 +10,6 @@ Leave the lines above as it is required by the web site generator 'Jekyll' {:/comment} -# Alpha complex # - - ## alpha_complex_persistence ## This program computes the persistent homology with coefficient field Z/pZ of the dD alpha complex built from a dD point cloud. diff --git a/src/Bitmap_cubical_complex/utilities/cubicalcomplex.md b/src/Bitmap_cubical_complex/utilities/cubicalcomplex.md index a1bb9007..5b0404c3 100644 --- a/src/Bitmap_cubical_complex/utilities/cubicalcomplex.md +++ b/src/Bitmap_cubical_complex/utilities/cubicalcomplex.md @@ -10,8 +10,6 @@ Leave the lines above as it is required by the web site generator 'Jekyll' {:/comment} -# Cubical complex# - ## cubical_complex_persistence ## This program computes persistent homology, by using the Bitmap_cubical_complex class, of cubical complexes provided in text files in Perseus style. See [here](/doc/latest/fileformats.html#FileFormatsPerseus) for a description of the file format. diff --git a/src/Bottleneck_distance/utilities/bottleneckdistance.md b/src/Bottleneck_distance/utilities/bottleneckdistance.md index f2749acc..939eb911 100644 --- a/src/Bottleneck_distance/utilities/bottleneckdistance.md +++ b/src/Bottleneck_distance/utilities/bottleneckdistance.md @@ -10,8 +10,6 @@ Leave the lines above as it is required by the web site generator 'Jekyll' {:/comment} -# Bottleneck distance # - ## bottleneck_read_file_example ## This program computes the Bottleneck distance between two persistence diagram files. diff --git a/src/Nerve_GIC/utilities/covercomplex.md b/src/Nerve_GIC/utilities/covercomplex.md index 6d16d16f..683c1b75 100644 --- a/src/Nerve_GIC/utilities/covercomplex.md +++ b/src/Nerve_GIC/utilities/covercomplex.md @@ -10,9 +10,6 @@ Leave the lines above as it is required by the web site generator 'Jekyll' {:/comment} -# Cover complex # - - ## Nerve ## This program builds the Nerve of a point cloud sampled on an OFF file. The cover C comes from the preimages of intervals covering a coordinate function, diff --git a/src/Rips_complex/utilities/ripscomplex.md b/src/Rips_complex/utilities/ripscomplex.md index 84f40cc1..6df49310 100644 --- a/src/Rips_complex/utilities/ripscomplex.md +++ b/src/Rips_complex/utilities/ripscomplex.md @@ -10,8 +10,6 @@ Leave the lines above as it is required by the web site generator 'Jekyll' {:/comment} -# Rips complex # - ## rips_persistence ## This program computes the persistent homology with coefficient field *Z/pZ* of a Rips complex defined on a set of input points, using Euclidean distance. The output diagram contains one bar per line, written with the convention: diff --git a/src/Witness_complex/utilities/witnesscomplex.md b/src/Witness_complex/utilities/witnesscomplex.md index 3be9bc55..da453cce 100644 --- a/src/Witness_complex/utilities/witnesscomplex.md +++ b/src/Witness_complex/utilities/witnesscomplex.md @@ -10,9 +10,6 @@ Leave the lines above as it is required by the web site generator 'Jekyll' {:/comment} -# Witness complex # - - For more details about the witness complex, please read the [user manual of the package](/doc/latest/group__witness__complex.html). ## weak_witness_persistence ## diff --git a/src/common/utilities/pointsetgenerator.md b/src/common/utilities/pointsetgenerator.md index 3b23e668..c8c819b7 100644 --- a/src/common/utilities/pointsetgenerator.md +++ b/src/common/utilities/pointsetgenerator.md @@ -10,10 +10,6 @@ Leave the lines above as it is required by the web site generator 'Jekyll' {:/comment} -# Miscellaneous # - -## off_file_from_shape_generator ## - Generates a pointset and save it in an OFF file. Command-line is: ``` -- cgit v1.2.3