From 3cfc598df6a152559f10ba840a8856587e1b1888 Mon Sep 17 00:00:00 2001 From: vrouvrea Date: Fri, 14 Apr 2017 13:30:04 +0000 Subject: Fix Sphinx and unitary tests issues git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2354 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7852df8e3fcea5b0b7f37f79f2b8b34cfd1db62c --- src/cython/doc/tangential_complex_user.rst | 32 +++++++++++++++--------------- 1 file changed, 16 insertions(+), 16 deletions(-) (limited to 'src/cython/doc/tangential_complex_user.rst') diff --git a/src/cython/doc/tangential_complex_user.rst b/src/cython/doc/tangential_complex_user.rst index 24f68f85..b2f40cce 100644 --- a/src/cython/doc/tangential_complex_user.rst +++ b/src/cython/doc/tangential_complex_user.rst @@ -134,7 +134,7 @@ This example builds the Tangential complex of point set read in an OFF file. repr(st.num_vertices()) + ' vertices.' print(result_str) for filtered_value in st.get_filtration(): - print(filtered_value) + print(filtered_value[0]) The output is: @@ -142,21 +142,21 @@ The output is: Tangential contains 12 simplices - 7 vertices. Simplex tree is of dimension 1 - 15 simplices - 7 vertices. - ([0], 0.0) - ([1], 0.0) - ([0, 1], 0.0) - ([2], 0.0) - ([0, 2], 0.0) - ([1, 2], 0.0) - ([3], 0.0) - ([1, 3], 0.0) - ([4], 0.0) - ([2, 4], 0.0) - ([5], 0.0) - ([4, 5], 0.0) - ([6], 0.0) - ([3, 6], 0.0) - ([5, 6], 0.0) + [0] + [1] + [0, 1] + [2] + [0, 2] + [1, 2] + [3] + [1, 3] + [4] + [2, 4] + [5] + [4, 5] + [6] + [3, 6] + [5, 6] Example with perturbation -- cgit v1.2.3 From d6a1577f46f84f606370662bd2629876ca113c81 Mon Sep 17 00:00:00 2001 From: vrouvrea Date: Fri, 14 Apr 2017 14:39:44 +0000 Subject: Fix Title level inconsistencies git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2356 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 755e450afddf28f87164a8f1f22c1f58faf9658a --- src/cython/doc/alpha_complex_user.rst | 2 -- src/cython/doc/bottleneck_distance_user.rst | 1 - src/cython/doc/cubical_complex_user.rst | 3 +-- src/cython/doc/persistence_graphical_tools_user.rst | 1 - src/cython/doc/persistent_cohomology_user.rst | 3 +-- src/cython/doc/rips_complex_user.rst | 1 - src/cython/doc/tangential_complex_user.rst | 3 +-- src/cython/doc/witness_complex_user.rst | 6 +----- 8 files changed, 4 insertions(+), 16 deletions(-) (limited to 'src/cython/doc/tangential_complex_user.rst') diff --git a/src/cython/doc/alpha_complex_user.rst b/src/cython/doc/alpha_complex_user.rst index 9aa6b13b..e8268ef1 100644 --- a/src/cython/doc/alpha_complex_user.rst +++ b/src/cython/doc/alpha_complex_user.rst @@ -1,4 +1,3 @@ -========================= Alpha complex user manual ========================= Definition @@ -198,7 +197,6 @@ the program output is: [2, 3, 6] -> 36.50 [2, 4, 6] -> 37.24 -============== CGAL citations ============== diff --git a/src/cython/doc/bottleneck_distance_user.rst b/src/cython/doc/bottleneck_distance_user.rst index 546a15bb..0066992f 100644 --- a/src/cython/doc/bottleneck_distance_user.rst +++ b/src/cython/doc/bottleneck_distance_user.rst @@ -1,4 +1,3 @@ -=============================== Bottleneck distance user manual =============================== Definition diff --git a/src/cython/doc/cubical_complex_user.rst b/src/cython/doc/cubical_complex_user.rst index 692acdd9..344b9554 100644 --- a/src/cython/doc/cubical_complex_user.rst +++ b/src/cython/doc/cubical_complex_user.rst @@ -1,4 +1,3 @@ -=========================== Cubical complex user manual =========================== Definition @@ -154,7 +153,7 @@ Examples. End user programs are available in cython/example/ folder. Bibliography -************ +============ .. bibliography:: bibliography.bib :filter: docnames diff --git a/src/cython/doc/persistence_graphical_tools_user.rst b/src/cython/doc/persistence_graphical_tools_user.rst index f713e971..cae18323 100644 --- a/src/cython/doc/persistence_graphical_tools_user.rst +++ b/src/cython/doc/persistence_graphical_tools_user.rst @@ -1,4 +1,3 @@ -======================================= Persistence graphical tools user manual ======================================= Definition diff --git a/src/cython/doc/persistent_cohomology_user.rst b/src/cython/doc/persistent_cohomology_user.rst index 69be3b86..72f1a7f7 100644 --- a/src/cython/doc/persistent_cohomology_user.rst +++ b/src/cython/doc/persistent_cohomology_user.rst @@ -1,4 +1,3 @@ -================================= Persistent cohomology user manual ================================= Definition @@ -108,7 +107,7 @@ We provide several example files: run these examples with -h for details on thei * :download:`tangential_complex_plain_homology_from_off_file_example.py <../example/tangential_complex_plain_homology_from_off_file_example.py>` Bibliography -************ +============ .. bibliography:: bibliography.bib :filter: docnames diff --git a/src/cython/doc/rips_complex_user.rst b/src/cython/doc/rips_complex_user.rst index 65d10304..f9760976 100644 --- a/src/cython/doc/rips_complex_user.rst +++ b/src/cython/doc/rips_complex_user.rst @@ -1,4 +1,3 @@ -========================= Rips complex user manual ========================= Definition diff --git a/src/cython/doc/tangential_complex_user.rst b/src/cython/doc/tangential_complex_user.rst index b2f40cce..10fc37ed 100644 --- a/src/cython/doc/tangential_complex_user.rst +++ b/src/cython/doc/tangential_complex_user.rst @@ -1,4 +1,3 @@ -============================== Tangential complex user manual ============================== .. include:: tangential_complex_sum.rst @@ -188,7 +187,7 @@ The output is: Inconsistencies has been fixed. Bibliography -************ +============ .. bibliography:: bibliography.bib :filter: docnames diff --git a/src/cython/doc/witness_complex_user.rst b/src/cython/doc/witness_complex_user.rst index 07945361..aa9cbb2c 100644 --- a/src/cython/doc/witness_complex_user.rst +++ b/src/cython/doc/witness_complex_user.rst @@ -1,12 +1,8 @@ -=========================== Witness complex user manual =========================== -Definition ----------- .. include:: witness_complex_sum.rst - Definitions ----------- @@ -128,7 +124,7 @@ Here is an example of constructing a strong witness complex filtration and compu * :download:`euclidean_strong_witness_complex_diagram_persistence_from_off_file_example.py <../example/periodic_cubical_complex_barcode_persistence_from_perseus_file_example.py>` Bibliography -************ +============ .. bibliography:: bibliography.bib :filter: docnames -- cgit v1.2.3 From 8eb632a06e27efef31f890db9e4132aa2a6e82b1 Mon Sep 17 00:00:00 2001 From: vrouvrea Date: Fri, 14 Apr 2017 15:18:48 +0000 Subject: Fix doc level inconsistencies git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2357 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2da8fae99b18cf215de376980266f1281ac95172 --- src/cython/doc/simplex_tree_user.rst | 1 - src/cython/doc/tangential_complex_user.rst | 1 + 2 files changed, 1 insertion(+), 1 deletion(-) (limited to 'src/cython/doc/tangential_complex_user.rst') diff --git a/src/cython/doc/simplex_tree_user.rst b/src/cython/doc/simplex_tree_user.rst index b2efca8b..4b1dde19 100644 --- a/src/cython/doc/simplex_tree_user.rst +++ b/src/cython/doc/simplex_tree_user.rst @@ -1,4 +1,3 @@ -======================== Simplex tree user manual ======================== Definition diff --git a/src/cython/doc/tangential_complex_user.rst b/src/cython/doc/tangential_complex_user.rst index 10fc37ed..03f9fea6 100644 --- a/src/cython/doc/tangential_complex_user.rst +++ b/src/cython/doc/tangential_complex_user.rst @@ -186,6 +186,7 @@ The output is: Tangential contains 4 vertices. Inconsistencies has been fixed. + Bibliography ============ -- cgit v1.2.3