From 777ed59f7d723139114b072682729eaed8596881 Mon Sep 17 00:00:00 2001 From: vrouvrea Date: Wed, 17 Aug 2016 11:08:46 +0000 Subject: Fix persistent_betti_numbers in Persistent_cohomology to make it work with cubical Cython examples renaming and fixing git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1439 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ab84ba3acd6241257f1787e29ac2e3ac005bbd80 --- ...ex_diagram_persistence_from_off_file_example.py | 63 ++++++++++++++++++++++ 1 file changed, 63 insertions(+) create mode 100755 src/cython/example/alpha_complex_diagram_persistence_from_off_file_example.py (limited to 'src/cython/example/alpha_complex_diagram_persistence_from_off_file_example.py') diff --git a/src/cython/example/alpha_complex_diagram_persistence_from_off_file_example.py b/src/cython/example/alpha_complex_diagram_persistence_from_off_file_example.py new file mode 100755 index 00000000..8e534061 --- /dev/null +++ b/src/cython/example/alpha_complex_diagram_persistence_from_off_file_example.py @@ -0,0 +1,63 @@ +#!/usr/bin/env python + +import gudhi +import argparse + +"""This file is part of the Gudhi Library. The Gudhi library + (Geometric Understanding in Higher Dimensions) is a generic C++ + library for computational topology. + + Author(s): Vincent Rouvreau + + Copyright (C) 2016 INRIA + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . +""" + +__author__ = "Vincent Rouvreau" +__copyright__ = "Copyright (C) 2016 INRIA" +__license__ = "GPL v3" + +parser = argparse.ArgumentParser(description='AlphaComplex creation from ' + 'points read in a OFF file.', + epilog='Example: ' + 'example/alpha_complex_diagram_persistence_from_off_file_example.py ' + '../data/points/tore3D_1307.off ' + '- Constructs a alpha complex with the ' + 'points from the given file. File format ' + 'is X1, X2, ..., Xn') +parser.add_argument("-f", "--file", type=str, required=True) +parser.add_argument('--no-diagram', default=False, action='store_true' , help='Flag for not to display the diagrams') + +args = parser.parse_args() + +with open(args.file, 'r') as f: + first_line = f.readline() + if (first_line == 'OFF\n') or (first_line == 'nOFF\n'): + + print("#####################################################################") + print("AlphaComplex creation from points read in a OFF file") + alpha_complex = gudhi.AlphaComplex(off_file=args.file, max_alpha_square=0.5) + + diag = alpha_complex.persistence(homology_coeff_field=2, min_persistence=0.1) + + print("betti_numbers()=") + print(alpha_complex.betti_numbers()) + + if args.no_diagram == False: + gudhi.diagram_persistence(diag) + else: + print(args.file, "is not a valid OFF file") + + f.close() -- cgit v1.2.3