From ef61b085afd77976a2c7fc5dfa13bc4b293b4f95 Mon Sep 17 00:00:00 2001 From: vrouvrea Date: Thu, 28 Sep 2017 13:43:58 +0000 Subject: Remove python rips_complex construction from files as it can lead to errors with correlation matrix Add examples for doxygen Cythonization of rips correlation matrix git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/rips_complex_from_correlation_matrix@2727 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 8aae33839fa27f9d26897e625904671b2c05e0e7 --- src/cython/example/alpha_rips_persistence_bottleneck_distance.py | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) (limited to 'src/cython/example/alpha_rips_persistence_bottleneck_distance.py') diff --git a/src/cython/example/alpha_rips_persistence_bottleneck_distance.py b/src/cython/example/alpha_rips_persistence_bottleneck_distance.py index ab5fc1e9..386f8457 100755 --- a/src/cython/example/alpha_rips_persistence_bottleneck_distance.py +++ b/src/cython/example/alpha_rips_persistence_bottleneck_distance.py @@ -45,13 +45,14 @@ args = parser.parse_args() with open(args.file, 'r') as f: first_line = f.readline() if (first_line == 'OFF\n') or (first_line == 'nOFF\n'): + point_cloud = gudhi.read_off(off_file=args.file) print("#####################################################################") print("RipsComplex creation from points read in a OFF file") message = "RipsComplex with max_edge_length=" + repr(args.threshold) print(message) - rips_complex = gudhi.RipsComplex(off_file=args.file, + rips_complex = gudhi.RipsComplex(points=point_cloud, max_edge_length=args.threshold) rips_stree = rips_complex.create_simplex_tree(max_dimension=args.max_dimension) @@ -67,7 +68,7 @@ with open(args.file, 'r') as f: message = "AlphaComplex with max_edge_length=" + repr(args.threshold) print(message) - alpha_complex = gudhi.AlphaComplex(off_file=args.file) + alpha_complex = gudhi.AlphaComplex(points=point_cloud) alpha_stree = alpha_complex.create_simplex_tree(max_alpha_square=(args.threshold * args.threshold)) message = "Number of simplices=" + repr(alpha_stree.num_simplices()) -- cgit v1.2.3