From af46c40bec8ae03cdf5a1e5a37ede198f910e3ea Mon Sep 17 00:00:00 2001 From: vrouvrea Date: Tue, 14 Mar 2017 22:08:43 +0000 Subject: Add Windows and CGAL_HEADER_ONLY cythonization support Add OFF reader interfaces (required by Euclidean witness complex) Add Euclidean_witness_complex git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2186 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4d780f05c3409bea47a81e4377dbaf509b9e718c --- src/cython/test/test_witness_complex.py | 51 +++++++++++++++++++-------------- 1 file changed, 29 insertions(+), 22 deletions(-) (limited to 'src/cython/test/test_witness_complex.py') diff --git a/src/cython/test/test_witness_complex.py b/src/cython/test/test_witness_complex.py index a55e80d7..7d1fb6be 100755 --- a/src/cython/test/test_witness_complex.py +++ b/src/cython/test/test_witness_complex.py @@ -1,4 +1,4 @@ -from gudhi import WitnessComplex +from gudhi import WitnessComplex, StrongWitnessComplex, SimplexTree """This file is part of the Gudhi Library. The Gudhi library (Geometric Understanding in Higher Dimensions) is a generic C++ @@ -32,24 +32,31 @@ def test_empty_witness_complex(): assert witness.__is_defined() == False def test_witness_complex(): - point_list = [[0, 0], [1, 0], [0, 1], [1, 1]] - witness = WitnessComplex(points=point_list, number_of_landmarks=10) - assert witness.__is_defined() == True - - # FIXME: Remove this line - witness.set_dimension(2) - - assert witness.num_simplices() == 13 - assert witness.num_vertices() == 10 - witness.initialize_filtration() -""" - assert witness.get_filtered_tree() == \ - [([0], 0.0), ([1], 0.0), ([0, 1], 0.0), ([2], 0.0), ([1, 2], 0.0), - ([3], 0.0), ([2, 3], 0.0), ([4], 0.0), ([5], 0.0), ([6], 0.0), - ([7], 0.0), ([8], 0.0), ([9], 0.0)] - - - assert witness.get_coface_tree([2], 1) == [([1, 2], 0.0), ([2, 3], 0.0)] - assert witness.get_star_tree([2]) == \ - [([1, 2], 0.0), ([2], 0.0), ([2, 3], 0.0)] -""" + nearest_landmark_table = [[[0, 0], [1, 1], [2, 2], [3, 3], [4, 4]], + [[1, 0], [2, 1], [3, 2], [4, 3], [0, 4]], + [[2, 0], [3, 1], [4, 2], [0, 3], [1, 4]], + [[3, 0], [4, 1], [0, 2], [1, 3], [2, 4]], + [[4, 0], [0, 1], [1, 2], [2, 3], [3, 4]]] + + witness_complex = WitnessComplex(nearest_landmark_table=nearest_landmark_table) + simplex_tree = witness_complex.create_simplex_tree(max_alpha_square=4.1) + assert simplex_tree.num_vertices() == 5 + assert simplex_tree.num_simplices() == 31 + simplex_tree = witness_complex.create_simplex_tree(max_alpha_square=4.1, limit_dimension=2) + assert simplex_tree.num_vertices() == 5 + assert simplex_tree.num_simplices() == 25 + +def test_strong_witness_complex(): + nearest_landmark_table = [[[0, 0], [1, 1], [2, 2], [3, 3], [4, 4]], + [[1, 0], [2, 1], [3, 2], [4, 3], [0, 4]], + [[2, 0], [3, 1], [4, 2], [0, 3], [1, 4]], + [[3, 0], [4, 1], [0, 2], [1, 3], [2, 4]], + [[4, 0], [0, 1], [1, 2], [2, 3], [3, 4]]] + + strong_witness_complex = StrongWitnessComplex(nearest_landmark_table=nearest_landmark_table) + simplex_tree = strong_witness_complex.create_simplex_tree(max_alpha_square=4.1) + assert simplex_tree.num_vertices() == 5 + assert simplex_tree.num_simplices() == 31 + simplex_tree = strong_witness_complex.create_simplex_tree(max_alpha_square=4.1, limit_dimension=2) + assert simplex_tree.num_vertices() == 5 + assert simplex_tree.num_simplices() == 25 -- cgit v1.2.3