From 0ac3c2e18ee942d59277816a341e94ff18ed370b Mon Sep 17 00:00:00 2001
From: vrouvrea <vrouvrea@636b058d-ea47-450e-bf9e-a15bfbe3eedb>
Date: Fri, 16 Mar 2018 12:44:38 +0000
Subject: Other interfaces

git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/python_nerve_gic_vincent@3293 636b058d-ea47-450e-bf9e-a15bfbe3eedb

Former-commit-id: 55298b30ca60b8e8956dbd11419acc128b1dee20
---
 src/cython/cython/nerve_gic.pyx          | 54 ++++++++++++++++++++++++++++++++
 src/cython/include/Nerve_gic_interface.h |  4 +++
 2 files changed, 58 insertions(+)

(limited to 'src/cython')

diff --git a/src/cython/cython/nerve_gic.pyx b/src/cython/cython/nerve_gic.pyx
index 989114da..e89fe1d0 100644
--- a/src/cython/cython/nerve_gic.pyx
+++ b/src/cython/cython/nerve_gic.pyx
@@ -46,6 +46,12 @@ cdef extern from "Nerve_gic_interface.h" namespace "Gudhi":
         void set_color_from_file(string color_file_name)
         void set_color_from_vector(vector[double] color)
         void set_cover_from_file(string cover_file_name)
+        void set_cover_from_function()
+        void set_cover_from_Euclidean_Voronoi(int m)
+        void set_function_from_coordinate(int k)
+        void set_function_from_file(string func_file_name)
+        void set_function_from_range(vector[double] function)
+        void set_gain(double g)
 
 # CoverComplex python interface
 cdef class CoverComplex:
@@ -201,3 +207,51 @@ cdef class CoverComplex:
         else:
             print("file " + cover_file_name + " not found.")
 
+    def set_cover_from_function(self):
+        """Creates a cover C from the preimages of the function f.
+        """
+        self.thisptr.set_cover_from_function()
+
+    def set_cover_from_Voronoi(self, m=100):
+        """Creates the cover C from the Voronoï cells of a subsampling of the
+        point cloud.
+
+        :param m: Number of points in the subsample. Default value is 100.
+        :type m: int
+        """
+        self.thisptr.set_cover_from_Euclidean_Voronoi(m)
+
+    def set_function_from_coordinate(self, k):
+        """Creates the function f from the k-th coordinate of the point cloud.
+
+        :param k: coordinate to use (start at 0).
+        :type k: int
+        """
+        self.thisptr.set_function_from_coordinate(k)
+
+    def set_function_from_file(self, func_file_name):
+        """Creates the function f from a file containing the function values.
+
+        :param func_file_name: name of the input function file.
+        :type func_file_name: string
+        """
+        if os.path.isfile(func_file_name):
+            self.thisptr.set_function_from_file(str.encode(func_file_name))
+        else:
+            print("file " + func_file_name + " not found.")
+
+    def set_function_from_range(self, function):
+        """Creates the function f from a vector stored in memory.
+
+        :param function: Input vector of values.
+        :type function: vector[double]
+        """
+        self.thisptr.set_function_from_range(function)
+
+    def set_gain(self, g):
+        """Sets a gain from a value stored in memory.
+
+        :param g: gain (default value is 0.3).
+        :type g: double
+        """
+        self.thisptr.set_gain(g)
diff --git a/src/cython/include/Nerve_gic_interface.h b/src/cython/include/Nerve_gic_interface.h
index a0f760f0..5eb15e1d 100644
--- a/src/cython/include/Nerve_gic_interface.h
+++ b/src/cython/include/Nerve_gic_interface.h
@@ -24,6 +24,7 @@
 #define INCLUDE_NERVE_GIC_INTERFACE_H_
 
 #include <gudhi/Simplex_tree.h>
+#include <gudhi/distance_functions.h>
 #include <gudhi/GIC.h>
 
 #include "Simplex_tree_interface.h"
@@ -42,6 +43,9 @@ class Nerve_gic_interface : public Cover_complex<std::vector<double>> {
     create_complex(*simplex_tree);
     simplex_tree->initialize_filtration();
   }
+  void set_cover_from_Euclidean_Voronoi(int m) {
+    set_cover_from_Voronoi(Gudhi::Euclidean_distance(), m);
+  }
 };
 
 }  // namespace cover_complex
-- 
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