From 599d68cd916f533bdb66dd9e684dd5703233b6bb Mon Sep 17 00:00:00 2001 From: Gard Spreemann Date: Wed, 25 Sep 2019 14:29:41 +0200 Subject: Delete all files in order to incorporate upstream's move to git. --- .../persistence_landscapes/CMakeLists.txt | 9 --- .../persistence_landscapes/average_landscapes.cpp | 63 --------------- .../compute_distance_of_landscapes.cpp | 93 ---------------------- .../compute_scalar_product_of_landscapes.cpp | 84 ------------------- .../persistence_landscapes/create_landscapes.cpp | 65 --------------- .../persistence_landscapes/plot_landscapes.cpp | 43 ---------- 6 files changed, 357 deletions(-) delete mode 100644 utilities/Persistence_representations/persistence_landscapes/CMakeLists.txt delete mode 100644 utilities/Persistence_representations/persistence_landscapes/average_landscapes.cpp delete mode 100644 utilities/Persistence_representations/persistence_landscapes/compute_distance_of_landscapes.cpp delete mode 100644 utilities/Persistence_representations/persistence_landscapes/compute_scalar_product_of_landscapes.cpp delete mode 100644 utilities/Persistence_representations/persistence_landscapes/create_landscapes.cpp delete mode 100644 utilities/Persistence_representations/persistence_landscapes/plot_landscapes.cpp (limited to 'utilities/Persistence_representations/persistence_landscapes') diff --git a/utilities/Persistence_representations/persistence_landscapes/CMakeLists.txt b/utilities/Persistence_representations/persistence_landscapes/CMakeLists.txt deleted file mode 100644 index 6b24d032..00000000 --- a/utilities/Persistence_representations/persistence_landscapes/CMakeLists.txt +++ /dev/null @@ -1,9 +0,0 @@ -project(Persistence_representations_landscapes_utilities) - -add_persistence_representation_creation_utility(create_landscapes "-1") - -add_persistence_representation_plot_utility(plot_landscapes ".land") - -add_persistence_representation_function_utility(average_landscapes ".land") -add_persistence_representation_function_utility(compute_distance_of_landscapes ".land" "1") -add_persistence_representation_function_utility(compute_scalar_product_of_landscapes ".land") diff --git a/utilities/Persistence_representations/persistence_landscapes/average_landscapes.cpp b/utilities/Persistence_representations/persistence_landscapes/average_landscapes.cpp deleted file mode 100644 index 4048f508..00000000 --- a/utilities/Persistence_representations/persistence_landscapes/average_landscapes.cpp +++ /dev/null @@ -1,63 +0,0 @@ -/* This file is part of the Gudhi Library. The Gudhi library - * (Geometric Understanding in Higher Dimensions) is a generic C++ - * library for computational topology. - * - * Author(s): Pawel Dlotko - * - * Copyright (C) 2016 Inria - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU General Public License as published by - * the Free Software Foundation, either version 3 of the License, or - * (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU General Public License for more details. - * - * You should have received a copy of the GNU General Public License - * along with this program. If not, see . - */ - -#include - -#include -#include - -using Persistence_landscape = Gudhi::Persistence_representations::Persistence_landscape; - -int main(int argc, char** argv) { - std::cout << "This program computes average of persistence landscapes stored in files (the files needs to be " - << "created beforehand).\n" - << "The parameters of this programs are names of files with persistence landscapes.\n"; - std::vector filenames; - - if (argc < 3) { - std::cout << "Wrong number of parameters, the program will now terminate \n"; - return 1; - } - - for (int i = 1; i < argc; ++i) { - filenames.push_back(argv[i]); - } - - std::vector lands; - for (size_t i = 0; i != filenames.size(); ++i) { - Persistence_landscape* l = new Persistence_landscape; - l->load_landscape_from_file(filenames[i]); - lands.push_back(l); - } - - Persistence_landscape av; - av.compute_average(lands); - - av.print_to_file("average.land"); - - for (size_t i = 0; i != filenames.size(); ++i) { - delete lands[i]; - } - - std::cout << "Average can be found in 'average.land' file\n"; - return 0; -} diff --git a/utilities/Persistence_representations/persistence_landscapes/compute_distance_of_landscapes.cpp b/utilities/Persistence_representations/persistence_landscapes/compute_distance_of_landscapes.cpp deleted file mode 100644 index 253fa273..00000000 --- a/utilities/Persistence_representations/persistence_landscapes/compute_distance_of_landscapes.cpp +++ /dev/null @@ -1,93 +0,0 @@ -/* This file is part of the Gudhi Library. The Gudhi library - * (Geometric Understanding in Higher Dimensions) is a generic C++ - * library for computational topology. - * - * Author(s): Pawel Dlotko - * - * Copyright (C) 2016 Inria - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU General Public License as published by - * the Free Software Foundation, either version 3 of the License, or - * (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU General Public License for more details. - * - * You should have received a copy of the GNU General Public License - * along with this program. If not, see . - */ - -#include - -#include -#include -#include -#include - -using Persistence_landscape = Gudhi::Persistence_representations::Persistence_landscape; - -int main(int argc, char** argv) { - std::cout << "This program computes distance of persistence landscapes stored in files (the files needs to be " - << "created beforehand).\n" - << "The first parameter of a program is an integer p. The program compute L^p distance of the two heat " - << "maps. For L^infty distance choose p = -1. \n" - << "The remaining parameters of this program are names of files with persistence landscapes.\n"; - - if (argc < 3) { - std::cout << "Wrong number of parameters, the program will now terminate \n"; - return 1; - } - - int pp = atoi(argv[1]); - double p = std::numeric_limits::max(); - if (pp != -1) { - p = pp; - } - - std::vector filenames; - for (int i = 2; i < argc; ++i) { - filenames.push_back(argv[i]); - } - std::vector landscaspes; - landscaspes.reserve(filenames.size()); - for (size_t file_no = 0; file_no != filenames.size(); ++file_no) { - Persistence_landscape l; - l.load_landscape_from_file(filenames[file_no]); - landscaspes.push_back(l); - } - - // and now we will compute the scalar product of landscapes. - - // first we prepare an array: - std::vector > distance(filenames.size()); - for (size_t i = 0; i != filenames.size(); ++i) { - std::vector v(filenames.size(), 0); - distance[i] = v; - } - - // and now we can compute the distances: - for (size_t i = 0; i != landscaspes.size(); ++i) { - for (size_t j = i; j != landscaspes.size(); ++j) { - distance[i][j] = distance[j][i] = compute_distance_of_landscapes(landscaspes[i], landscaspes[j], p); - } - } - - // and now output the result to the screen and a file: - std::ofstream out; - out.open("distance.land"); - for (size_t i = 0; i != distance.size(); ++i) { - for (size_t j = 0; j != distance.size(); ++j) { - std::cout << distance[i][j] << " "; - out << distance[i][j] << " "; - } - std::cout << std::endl; - out << std::endl; - } - out.close(); - - std::cout << "Distance can be found in 'distance.land' file\n"; - return 0; -} diff --git a/utilities/Persistence_representations/persistence_landscapes/compute_scalar_product_of_landscapes.cpp b/utilities/Persistence_representations/persistence_landscapes/compute_scalar_product_of_landscapes.cpp deleted file mode 100644 index 11fe2886..00000000 --- a/utilities/Persistence_representations/persistence_landscapes/compute_scalar_product_of_landscapes.cpp +++ /dev/null @@ -1,84 +0,0 @@ -/* This file is part of the Gudhi Library. The Gudhi library - * (Geometric Understanding in Higher Dimensions) is a generic C++ - * library for computational topology. - * - * Author(s): Pawel Dlotko - * - * Copyright (C) 2016 Inria - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU General Public License as published by - * the Free Software Foundation, either version 3 of the License, or - * (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU General Public License for more details. - * - * You should have received a copy of the GNU General Public License - * along with this program. If not, see . - */ - -#include - -#include -#include -#include - -using Persistence_landscape = Gudhi::Persistence_representations::Persistence_landscape; - -int main(int argc, char** argv) { - std::cout << "This program computes scalar product of persistence landscapes stored in a file (the file needs to be " - << "created beforehand). \n" - << "The parameters of this programs are names of files with persistence landscapes.\n"; - - if (argc < 3) { - std::cout << "Wrong number of parameters, the program will now terminate \n"; - return 1; - } - - std::vector filenames; - for (int i = 1; i < argc; ++i) { - filenames.push_back(argv[i]); - } - std::vector landscaspes; - landscaspes.reserve(filenames.size()); - for (size_t file_no = 0; file_no != filenames.size(); ++file_no) { - Persistence_landscape l; - l.load_landscape_from_file(filenames[file_no]); - landscaspes.push_back(l); - } - - // and now we will compute the scalar product of landscapes. - - // first we prepare an array: - std::vector > scalar_product(filenames.size()); - for (size_t i = 0; i != filenames.size(); ++i) { - std::vector v(filenames.size(), 0); - scalar_product[i] = v; - } - - // and now we can compute the scalar product: - for (size_t i = 0; i != landscaspes.size(); ++i) { - for (size_t j = i; j != landscaspes.size(); ++j) { - scalar_product[i][j] = scalar_product[j][i] = compute_inner_product(landscaspes[i], landscaspes[j]); - } - } - - // and now output the result to the screen and a file: - std::ofstream out; - out.open("scalar_product.land"); - for (size_t i = 0; i != scalar_product.size(); ++i) { - for (size_t j = 0; j != scalar_product.size(); ++j) { - std::cout << scalar_product[i][j] << " "; - out << scalar_product[i][j] << " "; - } - std::cout << std::endl; - out << std::endl; - } - out.close(); - - std::cout << "Distance can be found in 'scalar_product.land' file\n"; - return 0; -} diff --git a/utilities/Persistence_representations/persistence_landscapes/create_landscapes.cpp b/utilities/Persistence_representations/persistence_landscapes/create_landscapes.cpp deleted file mode 100644 index 59aad2f3..00000000 --- a/utilities/Persistence_representations/persistence_landscapes/create_landscapes.cpp +++ /dev/null @@ -1,65 +0,0 @@ -/* This file is part of the Gudhi Library. The Gudhi library - * (Geometric Understanding in Higher Dimensions) is a generic C++ - * library for computational topology. - * - * Author(s): Pawel Dlotko - * - * Copyright (C) 2016 Inria - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU General Public License as published by - * the Free Software Foundation, either version 3 of the License, or - * (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU General Public License for more details. - * - * You should have received a copy of the GNU General Public License - * along with this program. If not, see . - */ - -#include - -#include -#include -#include -#include - -using Persistence_landscape = Gudhi::Persistence_representations::Persistence_landscape; - -int main(int argc, char** argv) { - std::cout << "This program creates persistence landscapes files (*.land) of persistence diagrams files (*.pers) " - << "provided as an input.\n" - << "The first parameter of this program is a dimension of persistence that will be used in creation of " - << "the persistence heat maps." - << "If your input files contains persistence pairs of various dimension, as a first parameter of the " - << "procedure please provide the dimension of persistence you want to use." - << "If in your files there are only birth-death pairs of the same dimension, set the first parameter to " - << "-1.\n" - << "The remaining parameters are the names of files with persistence diagrams. \n"; - - if (argc < 3) { - std::cout << "Wrong parameter list, the program will now terminate \n"; - return 1; - } - std::vector filenames; - int dim = atoi(argv[1]); - unsigned dimension = std::numeric_limits::max(); - if (dim >= 0) { - dimension = (unsigned)dim; - } - for (int i = 2; i < argc; ++i) { - filenames.push_back(argv[i]); - } - - for (size_t i = 0; i != filenames.size(); ++i) { - std::cout << "Creating a landscape based on file : " << filenames[i] << std::endl; - Persistence_landscape l(filenames[i], dimension); - std::stringstream ss; - ss << filenames[i] << ".land"; - l.print_to_file(ss.str().c_str()); - } - return 0; -} diff --git a/utilities/Persistence_representations/persistence_landscapes/plot_landscapes.cpp b/utilities/Persistence_representations/persistence_landscapes/plot_landscapes.cpp deleted file mode 100644 index f32a92a1..00000000 --- a/utilities/Persistence_representations/persistence_landscapes/plot_landscapes.cpp +++ /dev/null @@ -1,43 +0,0 @@ -/* This file is part of the Gudhi Library. The Gudhi library - * (Geometric Understanding in Higher Dimensions) is a generic C++ - * library for computational topology. - * - * Author(s): Pawel Dlotko - * - * Copyright (C) 2016 Inria - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU General Public License as published by - * the Free Software Foundation, either version 3 of the License, or - * (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU General Public License for more details. - * - * You should have received a copy of the GNU General Public License - * along with this program. If not, see . - */ - -#include - -#include -#include - -using Persistence_landscape = Gudhi::Persistence_representations::Persistence_landscape; - -int main(int argc, char** argv) { - std::cout << "This program creates a gnuplot script from a persistence landscape stored in a file (the file needs " - << "to be created beforehand). Please call the code with the name of a single landscape file.\n"; - if (argc != 2) { - std::cout << "Wrong parameter list, the program will now terminate \n"; - return 1; - } - - Persistence_landscape l; - l.load_landscape_from_file(argv[1]); - l.plot(argv[1]); - - return 0; -} -- cgit v1.2.3