/* This file is part of the Gudhi Library. The Gudhi library
* (Geometric Understanding in Higher Dimensions) is a generic C++
* library for computational topology.
*
* Author(s): Vincent Rouvreau
*
* Copyright (C) 2015 Inria
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with this program. If not, see .
*/
#define BOOST_TEST_DYN_LINK
#define BOOST_TEST_MODULE "alpha_complex_3d"
#include
#include
#include // float comparison
#include
#include
#include
#include
#include // for std::size_t
#include
#include
#include
#include
// to construct Alpha_complex from a OFF file of points
#include
#include
#include
using Fast_weighted_periodic_alpha_complex_3d =
Gudhi::alpha_complex::Alpha_complex_3d;
using Safe_weighted_periodic_alpha_complex_3d =
Gudhi::alpha_complex::Alpha_complex_3d;
using Exact_weighted_periodic_alpha_complex_3d =
Gudhi::alpha_complex::Alpha_complex_3d;
typedef boost::mpl::list
wp_variants_type_list;
#ifdef GUDHI_DEBUG
BOOST_AUTO_TEST_CASE_TEMPLATE(Alpha_complex_weighted_periodic_throw, Weighted_periodic_alpha_complex_3d,
wp_variants_type_list) {
std::cout << "Weighted periodic alpha complex 3d exception throw" << std::endl;
using Creator = CGAL::Creator_uniform_3;
CGAL::Random random(7);
CGAL::Random_points_in_cube_3 in_cube(1, random);
std::vector wp_points;
for (int i = 0; i < 50; i++) {
typename Weighted_periodic_alpha_complex_3d::Point_3 p = *in_cube++;
wp_points.push_back(p);
}
std::vector p_weights;
// Weights must be in range ]0, 1/64 = 0.015625[
for (std::size_t i = 0; i < wp_points.size(); ++i) {
p_weights.push_back(random.get_double(0., 0.01));
}
std::cout << "Cuboid is not iso exception" << std::endl;
// Check it throws an exception when the cuboid is not iso
BOOST_CHECK_THROW(
Weighted_periodic_alpha_complex_3d wp_alpha_complex(wp_points, p_weights, -1., -1., -1., 0.9, 1., 1.),
std::invalid_argument);
BOOST_CHECK_THROW(
Weighted_periodic_alpha_complex_3d wp_alpha_complex(wp_points, p_weights, -1., -1., -1., 1., 0.9, 1.),
std::invalid_argument);
BOOST_CHECK_THROW(
Weighted_periodic_alpha_complex_3d wp_alpha_complex(wp_points, p_weights, -1., -1., -1., 1., 1., 0.9),
std::invalid_argument);
BOOST_CHECK_THROW(
Weighted_periodic_alpha_complex_3d wp_alpha_complex(wp_points, p_weights, -1., -1., -1., 1.1, 1., 1.),
std::invalid_argument);
BOOST_CHECK_THROW(
Weighted_periodic_alpha_complex_3d wp_alpha_complex(wp_points, p_weights, -1., -1., -1., 1., 1.1, 1.),
std::invalid_argument);
BOOST_CHECK_THROW(
Weighted_periodic_alpha_complex_3d wp_alpha_complex(wp_points, p_weights, -1., -1., -1., 1., 1., 1.1),
std::invalid_argument);
std::cout << "0 <= point.weight() < 1/64 * domain_size * domain_size exception" << std::endl;
// Weights must be in range ]0, 1/64 = 0.015625[
double temp = p_weights[25];
p_weights[25] = 1.0;
BOOST_CHECK_THROW(Weighted_periodic_alpha_complex_3d wp_alpha_complex(wp_points, p_weights, 0., 0., 0., 1., 1., 1.),
std::invalid_argument);
// Weights must be in range ]0, 1/64 = 0.015625[
p_weights[25] = temp;
temp = p_weights[14];
p_weights[14] = -1e-10;
BOOST_CHECK_THROW(Weighted_periodic_alpha_complex_3d wp_alpha_complex(wp_points, p_weights, 0., 0., 0., 1., 1., 1.),
std::invalid_argument);
p_weights[14] = temp;
std::cout << "wp_points and p_weights size exception" << std::endl;
// Weights and points must have the same size
// + 1
p_weights.push_back(1e-10);
BOOST_CHECK_THROW(Weighted_periodic_alpha_complex_3d wp_alpha_complex(wp_points, p_weights, 0., 0., 0., 1., 1., 1.),
std::invalid_argument);
// - 1
p_weights.pop_back();
p_weights.pop_back();
BOOST_CHECK_THROW(Weighted_periodic_alpha_complex_3d wp_alpha_complex(wp_points, p_weights, 0., 0., 0., 1., 1., 1.),
std::invalid_argument);
}
#endif
BOOST_AUTO_TEST_CASE(Alpha_complex_weighted_periodic) {
// ---------------------
// Fast weighted periodic version
// ---------------------
std::cout << "Fast weighted periodic alpha complex 3d" << std::endl;
using Creator = CGAL::Creator_uniform_3;
CGAL::Random random(7);
CGAL::Random_points_in_cube_3 in_cube(1, random);
std::vector p_points;
for (int i = 0; i < 50; i++) {
Fast_weighted_periodic_alpha_complex_3d::Point_3 p = *in_cube++;
p_points.push_back(p);
}
std::vector p_weights;
// Weights must be in range ]0, 1/64 = 0.015625[
for (std::size_t i = 0; i < p_points.size(); ++i) {
p_weights.push_back(random.get_double(0., 0.01));
}
Fast_weighted_periodic_alpha_complex_3d periodic_alpha_complex(p_points, p_weights, -1., -1., -1., 1., 1., 1.);
Gudhi::Simplex_tree<> stree;
periodic_alpha_complex.create_complex(stree);
// ----------------------
// Exact weighted periodic version
// ----------------------
std::cout << "Exact weighted periodic alpha complex 3d" << std::endl;
std::vector e_p_points;
for (auto p : p_points) {
e_p_points.push_back(Exact_weighted_periodic_alpha_complex_3d::Point_3(p[0], p[1], p[2]));
}
Exact_weighted_periodic_alpha_complex_3d exact_alpha_complex(e_p_points, p_weights, -1., -1., -1., 1., 1., 1.);
Gudhi::Simplex_tree<> exact_stree;
exact_alpha_complex.create_complex(exact_stree);
// ---------------------
// Compare both versions
// ---------------------
std::cout << "Exact weighted periodic alpha complex 3d is of dimension " << exact_stree.dimension()
<< " - Non exact is " << stree.dimension() << std::endl;
BOOST_CHECK(exact_stree.dimension() == stree.dimension());
std::cout << "Exact weighted periodic alpha complex 3d num_simplices " << exact_stree.num_simplices()
<< " - Non exact is " << stree.num_simplices() << std::endl;
BOOST_CHECK(exact_stree.num_simplices() == stree.num_simplices());
std::cout << "Exact weighted periodic alpha complex 3d num_vertices " << exact_stree.num_vertices()
<< " - Non exact is " << stree.num_vertices() << std::endl;
BOOST_CHECK(exact_stree.num_vertices() == stree.num_vertices());
// We cannot compare as objects from dispatcher on the alpha shape is not deterministic.
// cf. https://github.com/CGAL/cgal/issues/3346
auto sh = stree.filtration_simplex_range().begin();
auto sh_exact = exact_stree.filtration_simplex_range().begin();
while (sh != stree.filtration_simplex_range().end() || sh_exact != exact_stree.filtration_simplex_range().end()) {
GUDHI_TEST_FLOAT_EQUALITY_CHECK(stree.filtration(*sh), exact_stree.filtration(*sh_exact), 1e-14);
std::vector vh(stree.simplex_vertex_range(*sh).begin(), stree.simplex_vertex_range(*sh).end());
std::vector exact_vh(exact_stree.simplex_vertex_range(*sh_exact).begin(),
exact_stree.simplex_vertex_range(*sh_exact).end());
BOOST_CHECK(vh.size() == exact_vh.size());
++sh;
++sh_exact;
}
BOOST_CHECK(sh == stree.filtration_simplex_range().end());
BOOST_CHECK(sh_exact == exact_stree.filtration_simplex_range().end());
// ----------------------
// Safe weighted periodic version
// ----------------------
std::cout << "Safe weighted periodic alpha complex 3d" << std::endl;
std::vector s_p_points;
for (auto p : p_points) {
s_p_points.push_back(Safe_weighted_periodic_alpha_complex_3d::Point_3(p[0], p[1], p[2]));
}
Safe_weighted_periodic_alpha_complex_3d safe_alpha_complex(s_p_points, p_weights, -1., -1., -1., 1., 1., 1.);
Gudhi::Simplex_tree<> safe_stree;
safe_alpha_complex.create_complex(safe_stree);
// ---------------------
// Compare both versions
// ---------------------
// We cannot compare as objects from dispatcher on the alpha shape is not deterministic.
// cf. https://github.com/CGAL/cgal/issues/3346
sh = stree.filtration_simplex_range().begin();
auto sh_safe = safe_stree.filtration_simplex_range().begin();
while (sh != stree.filtration_simplex_range().end() || sh_safe != safe_stree.filtration_simplex_range().end()) {
GUDHI_TEST_FLOAT_EQUALITY_CHECK(stree.filtration(*sh), safe_stree.filtration(*sh_safe), 1e-14);
std::vector vh(stree.simplex_vertex_range(*sh).begin(), stree.simplex_vertex_range(*sh).end());
std::vector safe_vh(safe_stree.simplex_vertex_range(*sh_safe).begin(),
safe_stree.simplex_vertex_range(*sh_safe).end());
BOOST_CHECK(vh.size() == safe_vh.size());
++sh;
++sh_safe;
}
BOOST_CHECK(sh == stree.filtration_simplex_range().end());
BOOST_CHECK(sh_safe == safe_stree.filtration_simplex_range().end());
}