/* This file is part of the Gudhi Library. The Gudhi library
* (Geometric Understanding in Higher Dimensions) is a generic C++
* library for computational topology.
*
* Author(s): David Salinas
*
* Copyright (C) 2014 INRIA Sophia Antipolis-Mediterranee (France)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with this program. If not, see .
*/
#include
#include
#include
#include
#include
#include
using namespace std;
using namespace Gudhi;
using namespace skbl;
using namespace contraction;
struct Geometry_trait {
typedef Point_d Point;
};
typedef Geometry_trait::Point Point;
typedef Skeleton_blocker_simple_geometric_traits Complex_geometric_traits;
typedef Skeleton_blocker_geometric_complex< Complex_geometric_traits > Complex;
typedef Edge_profile Profile;
typedef Skeleton_blocker_contractor Complex_contractor;
template
void build_rips(ComplexType& complex, double offset) {
if (offset <= 0) return;
auto vertices = complex.vertex_range();
for (auto p = vertices.begin(); p != vertices.end(); ++p)
for (auto q = p; ++q != vertices.end(); /**/) {
if (squared_dist(complex.point(*p), complex.point(*q)) < 4 * offset * offset)
complex.add_edge_without_blockers(*p, *q);
}
}
int main(int argc, char *argv[]) {
if (argc != 3) {
std::cerr << "Usage " << argv[0] << " ../../../data/meshes/SO3_10000.off 0.3 to load the file " <<
"../../data/SO3_10000.off and contract the Rips complex built with paremeter 0.3.\n";
return -1;
}
Complex complex;
// load only the points
Skeleton_blocker_off_reader off_reader(argv[1], complex, true);
if (!off_reader.is_valid()) {
std::cerr << "Unable to read file:" << argv[1] << std::endl;
return EXIT_FAILURE;
}
std::cout << "Build the Rips complex with " << complex.num_vertices() << " vertices" << std::endl;
build_rips(complex, atof(argv[2]));
boost::timer::auto_cpu_timer t;
std::cout << "Initial complex has " <<
complex.num_vertices() << " vertices and " <<
complex.num_edges() << " edges" << std::endl;
Complex_contractor contractor(complex,
new Edge_length_cost,
contraction::make_first_vertex_placement(),
contraction::make_link_valid_contraction(),
contraction::make_remove_popable_blockers_visitor());
contractor.contract_edges();
std::cout << "Counting final number of simplices \n";
unsigned num_simplices = std::distance(complex.complex_simplex_range().begin(), complex.complex_simplex_range().end());
std::cout << "Final complex has " <<
complex.num_vertices() << " vertices, " <<
complex.num_edges() << " edges, " <<
complex.num_blockers() << " blockers and " <<
num_simplices << " simplices" << std::endl;
std::cout << "Time to simplify and enumerate simplices:\n";
return EXIT_SUCCESS;
}