/* This file is part of the Gudhi Library. The Gudhi library * (Geometric Understanding in Higher Dimensions) is a generic C++ * library for computational topology. * * Author(s): Pawel Dlotko * * Copyright (C) 2015 INRIA (France) * * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation, either version 3 of the License, or * (at your option) any later version. * * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with this program. If not, see . */ #ifndef HAUSDORFF_DISTANCES_H #define HAUSDORFF_DISTANCES_H #include #include #include #include #include namespace Gudhi { namespace Gudhi_stat { /** * This file contains various implementations of Hausrodff distances between collections of points. It contains various implementations that can be used for specific case. **/ /** * The implementation below works for a case of a metric space given by a distance matrix, and a subspace of a metric space. Our task is to find a Hausdorff distance between the subspace and the whole space. * The input is a distance matrix (lower triangular part) and a vector of bools indicating a subspace (elementss set to true belongs to the space, the elements set to false do not). **/ class Hausdorff_distance_between_subspace_and_the_whole_metric_space { public: Hausdorff_distance_between_subspace_and_the_whole_metric_space( const std::vector< std::vector >& distance_matrix ):distance_matrix(distance_matrix){} double operator()( const std::vector< bool >& is_subspace ) { double maximal_distance = -std::numeric_limits::max(); for ( size_t j = 0 ; j != this->distance_matrix.size() ; ++j ) { double minimal_distance = std::numeric_limits::max(); for ( size_t i = 0 ; i != this->distance_matrix.size() ; ++i ) { if ( !is_subspace[i] )continue; double distance = 0; if ( i < j ) { distance = this->distance_matrix[i][j]; } else { if ( i > j )distance = this->distance_matrix[j][i]; } if ( distance > minimal_distance )minimal_distance = distance; } if ( maximal_distance < minimal_distance )maximal_distance = minimal_distance; } return maximal_distance; }//Hausdorff_distance_between_subspace_and_the_whole_metric_space double operator()( const std::vector< size_t >& subspace , const std::vector< size_t >& space = std::vector< size_t >() ) { bool dbg = false; if ( dbg ) { std::cerr << "Calling double operator()( const std::vector< size_t >& subspace , const std::vector< size_t >& space = std::vector< size_t >() ) method \n"; std::cerr << "subspace.size() : " << subspace.size() << std::endl; } double maximal_distance = -std::numeric_limits::max(); for ( size_t j = 0 ; j != this->distance_matrix.size() ; ++j ) { double minimal_distance = std::numeric_limits::max(); for ( size_t i = 0 ; i != subspace.size() ; ++i ) { double distance = 0; if ( subspace[i] < j ) { distance = this->distance_matrix[ j ][ subspace[i] ]; } else { if ( subspace[i] > j )distance = this->distance_matrix[ subspace[i] ][ j ]; } if ( distance < minimal_distance )minimal_distance = distance; } if ( maximal_distance < minimal_distance )maximal_distance = minimal_distance; } if ( dbg ) { std::cerr << "maximal_distance : " << maximal_distance << std::endl; getchar(); } return maximal_distance; }//Hausdorff_distance_between_subspace_and_the_whole_metric_space private: const std::vector< std::vector >& distance_matrix; }; template std::vector< std::vector > compute_all_to_all_distance_matrix_between_points( const std::vector< PointType >& points ) { bool dbg = false; std::vector< std::vector > result; result.reserve( points.size() ); distanceFunction f; for ( size_t i = 0 ; i != points.size() ; ++i ) { std::vector this_row; this_row.reserve( i ); for ( size_t j = 0 ; j != i ; ++j ) { double distance = f( points[i] , points[j] ); if ( dbg ){std::cerr << "The distance between point : " << i << " and the point : " << j << " is :" << distance << std::endl;} this_row.push_back( distance ); } result.push_back( this_row ); } return result; }//compute_all_to_all_distance_matrix_between_points template class identity { public: T& operator()( T& org ) { return org; } }; }//namespace Gudhi_stat }//namespace Gudhi #endif