/* This file is part of the Gudhi Library. The Gudhi library * (Geometric Understanding in Higher Dimensions) is a generic C++ * library for computational topology. * * Author(s): Pawel Dlotko * * Copyright (C) 2015 INRIA (France) * * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation, either version 3 of the License, or * (at your option) any later version. * * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with this program. If not, see . */ #define BOOST_TEST_DYN_LINK #define BOOST_TEST_MODULE "Persistence_representations" #include #include #include #include using namespace Gudhi; using namespace Gudhi::Persistence_representations; BOOST_AUTO_TEST_CASE(check_construction_of_landscape) { Persistence_landscape_on_grid l( "data/file_with_diagram_1" , 100 , std::numeric_limits::max()); l.print_to_file( "landscape_from_file_with_diagram_1" ); Persistence_landscape_on_grid g; g.load_landscape_from_file( "landscape_from_file_with_diagram_1" ); BOOST_CHECK( l == g ); } BOOST_AUTO_TEST_CASE(check_construction_of_landscape_using_only_ten_levels) { //TODO unsigned number = 10; Persistence_landscape_on_grid l( "data/file_with_diagram_1" , 100 , number ); Persistence_landscape_on_grid g( "data/file_with_diagram_1" , 100 , std::numeric_limits::max()); //cut all the elements of order > 10 in g. for ( size_t level = 0 ; level != number ; ++level ) { std::vector v1 = l.vectorize(level); std::vector v2 = g.vectorize(level); BOOST_CHECK( v1.size() == v2.size() ); for ( size_t i = 0 ; i != v1.size() ; ++i ) { BOOST_CHECK( v1[i] == v2[i] ); } } } BOOST_AUTO_TEST_CASE(check_computations_of_integrals) { Persistence_landscape_on_grid p( "data/file_with_diagram_1" , 100 , std::numeric_limits::max()); double integral = p.compute_integral_of_landscape(); //cerr << "integral : " << integral << endl;getchar(); BOOST_CHECK( fabs( integral - 27.343 ) <= 0.00005 ); } BOOST_AUTO_TEST_CASE(check_computations_of_integrals_for_each_level_separatelly) { Persistence_landscape_on_grid p( "data/file_with_diagram_1" , 100, std::numeric_limits::max() ); std::vector< double > integrals_fir_different_levels; //integrals_fir_different_levels.push_back(); integrals_fir_different_levels.push_back(0.241168); integrals_fir_different_levels.push_back(0.239276); integrals_fir_different_levels.push_back(0.237882); integrals_fir_different_levels.push_back(0.235193); integrals_fir_different_levels.push_back(0.230115); integrals_fir_different_levels.push_back(0.227626); integrals_fir_different_levels.push_back(0.226132); integrals_fir_different_levels.push_back(0.223643); integrals_fir_different_levels.push_back(0.221651); integrals_fir_different_levels.push_back(0.220556); integrals_fir_different_levels.push_back(0.21727); integrals_fir_different_levels.push_back(0.215976); integrals_fir_different_levels.push_back(0.213685); integrals_fir_different_levels.push_back(0.211993); integrals_fir_different_levels.push_back(0.2102); integrals_fir_different_levels.push_back(0.208707); integrals_fir_different_levels.push_back(0.207014); integrals_fir_different_levels.push_back(0.205122); integrals_fir_different_levels.push_back(0.204226); integrals_fir_different_levels.push_back(0.202633); for ( size_t level = 0 ; level != integrals_fir_different_levels.size() ; ++level ) { double integral = p.compute_integral_of_landscape( level ); //cerr << integral << endl; BOOST_CHECK( fabs( integral - integrals_fir_different_levels[level] ) <= 0.00005 ); } } BOOST_AUTO_TEST_CASE(check_computations_of_integrals_of_powers_of_landscape) { Persistence_landscape_on_grid p( "data/file_with_diagram_1" , 100, std::numeric_limits::max() ); std::vector integrals_fir_different_powers; integrals_fir_different_powers.push_back( 0.241168); integrals_fir_different_powers.push_back( 0.239276); integrals_fir_different_powers.push_back( 0.237882); integrals_fir_different_powers.push_back( 0.235193); integrals_fir_different_powers.push_back( 0.23011); for ( size_t power = 0 ; power != 5 ; ++power ) { double integral = p.compute_integral_of_landscape( power ); //cerr << integral << endl; BOOST_CHECK( fabs( integral - integrals_fir_different_powers[power] ) <= 0.00001 ); } } BOOST_AUTO_TEST_CASE(check_computations_of_values_on_different_points) { Persistence_landscape_on_grid p( "data/file_with_diagram_1" , 100, std::numeric_limits::max() ); std::vector< double > results_level_0; results_level_0.push_back(0.00997867); results_level_0.push_back(0.0521921); results_level_0.push_back(0.104312); results_level_0.push_back(0.156432); results_level_0.push_back(0.208552); results_level_0.push_back(0.260672); results_level_0.push_back(0.312792); results_level_0.push_back(0.364912); results_level_0.push_back(0.417032); results_level_0.push_back(0.429237); std::vector< double > results_level_10; results_level_10.push_back(7.21433e-05); results_level_10.push_back(0.0422135); results_level_10.push_back(0.0943335); results_level_10.push_back(0.146453); results_level_10.push_back(0.198573); results_level_10.push_back(0.240715); results_level_10.push_back(0.272877); results_level_10.push_back(0.324997); results_level_10.push_back(0.359232); results_level_10.push_back(0.379344); double x = 0.0012321; double dx = 0.05212; for ( size_t i = 0 ; i != 10 ; ++i ) { BOOST_CHECK( almost_equal( p.compute_value_at_a_given_point(0,x) , results_level_0[i] ) ); BOOST_CHECK( almost_equal( p.compute_value_at_a_given_point(10,x) , results_level_10[i] ) ); x += dx; } } BOOST_AUTO_TEST_CASE(check_computations_sum_differences_and_multiplications) { Persistence_landscape_on_grid p( "data/file_with_diagram_1" ,100 , std::numeric_limits::max()); Persistence_landscape_on_grid second("data/file_with_diagram_1" , 100, std::numeric_limits::max() ); Persistence_landscape_on_grid sum = p + second; Persistence_landscape_on_grid difference = p - second; Persistence_landscape_on_grid multiply_by_scalar = 10*p; ; Persistence_landscape_on_grid template_sum; template_sum.load_landscape_from_file( "data/sum_on_grid_test" ); Persistence_landscape_on_grid template_difference; template_difference.load_landscape_from_file( "data/difference_on_grid_test" ); Persistence_landscape_on_grid template_multiply_by_scalar; template_multiply_by_scalar.load_landscape_from_file( "data/multiply_by_scalar_on_grid_test" ); BOOST_CHECK( sum == template_sum ); BOOST_CHECK( difference == template_difference ); BOOST_CHECK( multiply_by_scalar == template_multiply_by_scalar ); } BOOST_AUTO_TEST_CASE(check_computations_of_maxima_and_norms) { Persistence_landscape_on_grid p( "data/file_with_diagram_1" , 0. , 1. , 100 ); Persistence_landscape_on_grid second("data/file_with_diagram_2" , 0. , 1. , 100 ); Persistence_landscape_on_grid sum = p + second; //cerr << p.compute_maximum() << endl; //cerr << p.compute_norm_of_landscape(1) << endl; //cerr << p.compute_norm_of_landscape(2) << endl; //cerr << p.compute_norm_of_landscape(3) << endl; //cerr << compute_distance_of_landscapes_on_grid(p,sum,1) << endl; //cerr << compute_distance_of_landscapes_on_grid(p,sum,2) << endl; //cerr << compute_distance_of_landscapes_on_grid(p,sum,std::numeric_limits::max()) << endl; BOOST_CHECK( fabs( p.compute_maximum() - 0.46 ) <= 0.00001 ); BOOST_CHECK( fabs( p.compute_norm_of_landscape(1) - 27.3373 ) <= 0.00001 ); BOOST_CHECK( fabs( p.compute_norm_of_landscape(2) - 1.84143 ) <= 0.00001 ); BOOST_CHECK( fabs( p.compute_norm_of_landscape(3) - 0.927067 ) <= 0.00001 ); BOOST_CHECK( fabs( compute_distance_of_landscapes_on_grid(p,sum,1) - 16.8519 ) <= 0.00005 ); BOOST_CHECK( fabs( compute_distance_of_landscapes_on_grid(p,sum,2) - 1.44542 ) <= 0.00001 ); BOOST_CHECK( fabs(compute_distance_of_landscapes_on_grid(p,sum,std::numeric_limits::max()) - 0.45 ) <= 0.00001 ); } BOOST_AUTO_TEST_CASE(check_default_parameters_of_distances ) { std::vector< std::pair< double , double > > diag = read_persistence_intervals_in_one_dimension_from_file( "data/file_with_diagram" ); Persistence_landscape_on_grid p( diag , 0. , 1. , 100 ); std::vector< std::pair< double , double > > diag1 = read_persistence_intervals_in_one_dimension_from_file( "data/file_with_diagram_1" ); Persistence_landscape_on_grid q( diag1 , 0. , 1. , 100 ); double dist_numeric_limit_max = p.distance( q,std::numeric_limits::max() ); double dist_infinity = p.distance( q,std::numeric_limits::infinity() ); BOOST_CHECK( dist_numeric_limit_max == dist_infinity ); } BOOST_AUTO_TEST_CASE(check_computations_of_averages) { Persistence_landscape_on_grid p( "data/file_with_diagram", 0.,1.,100 ); Persistence_landscape_on_grid q( "data/file_with_diagram_1", 0.,1.,100 ); Persistence_landscape_on_grid av; av.compute_average( {&p,&q} ); Persistence_landscape_on_grid template_average; template_average.load_landscape_from_file( "data/average_on_a_grid" ); BOOST_CHECK ( template_average == av ); } BOOST_AUTO_TEST_CASE(check_computations_of_distances) { Persistence_landscape_on_grid p( "data/file_with_diagram", 0.,1.,10000 ); Persistence_landscape_on_grid q( "data/file_with_diagram_1", 0.,1.,10000 ); BOOST_CHECK( fabs( p.distance( q )- 25.5779) <= 0.00005 ); BOOST_CHECK( fabs( p.distance( q , 2) - 2.04891) <= 0.00001 ); BOOST_CHECK( fabs( p.distance( q , std::numeric_limits::max() )-0.359 ) <= 0.00001 ); } BOOST_AUTO_TEST_CASE(check_computations_of_scalar_product) { Persistence_landscape_on_grid p( "data/file_with_diagram" , 0.,1.,10000); Persistence_landscape_on_grid q( "data/file_with_diagram_1", 0.,1.,10000 ); //std::cerr << p.compute_scalar_product( q ) << std::endl; BOOST_CHECK( almost_equal( p.compute_scalar_product( q ) , 0.754367 ) ); } //Below I am storing the code used to generate tests for that functionality. /* Persistence_landscape_on_grid l( "file_with_diagram_1" , 100 ); l.print_to_file( "landscape_from_file_with_diagram_1" ); Persistence_landscape_on_grid g; g.load_landscape_from_file( "landscape_from_file_with_diagram_1" ); cerr << ( l == g ); */ /* Persistence_landscape_on_grid l( "file_with_diagram_1" , 100 ); cerr << l << endl; cerr << l.compute_integral_of_landscape() << endl; */ /* Persistence_landscape_on_grid p( "file_with_diagram_1" , 100 ); for ( size_t level = 0 ; level != 30 ; ++level ) { double integral = p.compute_integral_of_landscape( level ); cerr << integral << endl; } */ /* Persistence_landscape_on_grid p( "file_with_diagram_1" , 100 ); for ( size_t power = 0 ; power != 5 ; ++power ) { double integral = p.compute_integral_of_landscape( (double)power ); cerr << integral << endl; } */ /* Persistence_landscape_on_grid p( "file_with_diagram_1" , 100 ); double x = 0.0012321; double dx = 0.05212; for ( size_t i = 0 ; i != 10 ; ++i ) { cerr << p.compute_value_at_a_given_point(10,x) << endl; x += dx; } */ /* Persistence_landscape_on_grid p( "file_with_diagram_1",100 ); Persistence_landscape_on_grid second("file_with_diagram_1",100 ); Persistence_landscape_on_grid sum = p + second; Persistence_landscape_on_grid difference = p - second; Persistence_landscape_on_grid multiply_by_scalar = 10*p; sum.print_to_file( "sum_on_grid_test" ); difference.print_to_file( "difference_on_grid_test" ); multiply_by_scalar.print_to_file( "multiply_by_scalar_on_grid_test" ); */ /* Persistence_landscape_on_grid p( "file_with_diagram_1" , 0 , 1 , 100 ); Persistence_landscape_on_grid second("file_with_diagram_1", 0 , 1 , 100 ); Persistence_landscape_on_grid sum = p + second; cerr << "max : " << p.compute_maximum() << endl; cerr << "1-norm : " << p.compute_norm_of_landscape(1) << endl; cerr << "2-norm : " << p.compute_norm_of_landscape(2) << endl; cerr << "3-norm : " << p.compute_norm_of_landscape(3) << endl; cerr << compute_distance_of_landscapes_on_grid(p,sum,1) << endl; cerr << compute_distance_of_landscapes_on_grid(p,sum,2) << endl; cerr << compute_distance_of_landscapes_on_grid(p,sum,-1) << endl; */ /* Persistence_landscape_on_grid p( "file_with_diagram", 0,1,100 ); Persistence_landscape_on_grid q( "file_with_diagram_1", 0,1,100 ); Persistence_landscape_on_grid av; av.compute_average( {&p,&q} ); av.print_to_file("average_on_a_grid"); Persistence_landscape_on_grid template_average; template_average.load_landscape_from_file( "average_on_a_grid" ); if ( template_average == av ) { cerr << "OK OK \n"; }*/ /* Persistence_landscape_on_grid p( "file_with_diagram" , 0,1,10000); Persistence_landscape_on_grid q( "file_with_diagram_1" , 0,1,10000); cerr << p.distance( &q )<< endl; cerr << p.distance( &q , 2 ) << endl; cerr << p.distance( &q , std::numeric_limits::max() ) << endl; */ /* Persistence_landscape_on_grid p( "file_with_diagram", 0,1,10000 ); Persistence_landscape_on_grid q( "file_with_diagram_1", 0,1,10000 ); //std::vector< std::pair< double,double > > aa; //aa.push_back( std::make_pair( 0,1 ) ); //Persistence_landscape_on_grid p( aa, 0,1,10 ); //Persistence_landscape_on_grid q( aa, 0,1,10 ); cerr << p.compute_scalar_product( &q ) << endl; */