/* This file is part of the Gudhi Library. The Gudhi library * (Geometric Understanding in Higher Dimensions) is a generic C++ * library for computational topology. * * Author(s): Mathieu Carriere * * Copyright (C) 2018 INRIA (France) * * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation, either version 3 of the License, or * (at your option) any later version. * * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with this program. If not, see . */ #include #include #include #include using Persistence_diagram = Gudhi::Persistence_representations::Persistence_diagram; using PWG = Gudhi::Persistence_representations::Persistence_weighted_gaussian; int main(int argc, char** argv) { Persistence_diagram persistence1, persistence2; persistence1.push_back(std::make_pair(1, 2)); persistence1.push_back(std::make_pair(6, 8)); persistence1.push_back(std::make_pair(0, 4)); persistence1.push_back(std::make_pair(3, 8)); persistence2.push_back(std::make_pair(2, 9)); persistence2.push_back(std::make_pair(1, 6)); persistence2.push_back(std::make_pair(3, 5)); persistence2.push_back(std::make_pair(6, 10)); double sigma = 1; double tau = 1; int m = 10000; PWG PWG1(persistence1, sigma, m, Gudhi::Persistence_representations::arctan_weight(1,1)); PWG PWG2(persistence2, sigma, m, Gudhi::Persistence_representations::arctan_weight(1,1)); PWG PWGex1(persistence1, sigma, -1, Gudhi::Persistence_representations::arctan_weight(1,1)); PWG PWGex2(persistence2, sigma, -1, Gudhi::Persistence_representations::arctan_weight(1,1)); // Linear PWG std::cout << "Approx PWG kernel: " << PWG1.compute_scalar_product (PWG2) << std::endl; std::cout << "Exact PWG kernel: " << PWGex1.compute_scalar_product (PWGex2) << std::endl; std::cout << "Distance induced by approx PWG kernel: " << PWG1.distance (PWG2) << std::endl; std::cout << "Distance induced by exact PWG kernel: " << PWGex1.distance (PWGex2) << std::endl; // Gaussian PWG std::cout << "Approx Gaussian PWG kernel: " << std::exp( -PWG1.distance (PWG2) ) / (2*tau*tau) << std::endl; std::cout << "Exact Gaussian PWG kernel: " << std::exp( -PWGex1.distance (PWGex2) ) / (2*tau*tau) << std::endl; // PSS Persistence_diagram pd1 = persistence1; int numpts = persistence1.size(); for(int i = 0; i < numpts; i++) pd1.emplace_back(persistence1[i].second,persistence1[i].first); Persistence_diagram pd2 = persistence2; numpts = persistence2.size(); for(int i = 0; i < numpts; i++) pd2.emplace_back(persistence2[i].second,persistence2[i].first); PWG pwg1(pd1, 2*std::sqrt(sigma), m, Gudhi::Persistence_representations::pss_weight); PWG pwg2(pd2, 2*std::sqrt(sigma), m, Gudhi::Persistence_representations::pss_weight); PWG pwgex1(pd1, 2*std::sqrt(sigma), -1, Gudhi::Persistence_representations::pss_weight); PWG pwgex2(pd2, 2*std::sqrt(sigma), -1, Gudhi::Persistence_representations::pss_weight); std::cout << "Approx PSS kernel: " << pwg1.compute_scalar_product (pwg2) / (16*Gudhi::Persistence_representations::pi*sigma) << std::endl; std::cout << "Exact PSS kernel: " << pwgex1.compute_scalar_product (pwgex2) / (16*Gudhi::Persistence_representations::pi*sigma) << std::endl; return 0; }