/* This file is part of the Gudhi Library. The Gudhi library * (Geometric Understanding in Higher Dimensions) is a generic C++ * library for computational topology. * * Author(s): Vincent Rouvreau * * Copyright (C) 2016 INRIA * * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation, either version 3 of the License, or * (at your option) any later version. * * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with this program. If not, see . */ #ifndef ALPHA_COMPLEX_INTERFACE_H #define ALPHA_COMPLEX_INTERFACE_H #include #include #include #include // std::pair #include namespace Gudhi { namespace alpha_complex { class Alpha_complex_interface : public Alpha_complex< CGAL::Epick_d< CGAL::Dynamic_dimension_tag > > { using Alpha_complex = Alpha_complex< CGAL::Epick_d< CGAL::Dynamic_dimension_tag > > ; typedef typename Alpha_complex::Simplex_handle Simplex_handle; typedef typename std::pair Insertion_result; using Simplex = std::vector; using Filtered_complex = std::pair; using Complex_tree = std::vector; using Point_d = Alpha_complex::Point_d; public: Alpha_complex_interface(std::vector>&points, double max_alpha_square) : Alpha_complex(points, max_alpha_square) { } // bool from_file is a workaround fro cython to find the correct signature Alpha_complex_interface(const std::string& off_file, double max_alpha_square, bool from_file) : Alpha_complex(off_file, max_alpha_square) { } bool find_simplex(const Simplex& vh) { return (Alpha_complex::find(vh) != Alpha_complex::null_simplex()); } bool insert_simplex_and_subfaces(const Simplex& complex, Filtration_value filtration = 0) { Insertion_result result = Alpha_complex::insert_simplex_and_subfaces(complex, filtration); return (result.second); } Filtration_value simplex_filtration(const Simplex& complex) { return Alpha_complex::filtration(Alpha_complex::find(complex)); } void remove_maximal_simplex(const Simplex& complex) { return Alpha_complex::remove_maximal_simplex(Alpha_complex::find(complex)); } Complex_tree get_filtered_tree() { Complex_tree filtered_tree; for (auto f_simplex : Alpha_complex::filtration_simplex_range()) { Simplex simplex; for (auto vertex : Alpha_complex::simplex_vertex_range(f_simplex)) { simplex.insert(simplex.begin(), vertex); } filtered_tree.push_back(std::make_pair(simplex, Alpha_complex::filtration(f_simplex))); } return filtered_tree; } Complex_tree get_skeleton_tree(int dimension) { Complex_tree skeleton_tree; for (auto f_simplex : Alpha_complex::skeleton_simplex_range(dimension)) { Simplex simplex; for (auto vertex : Alpha_complex::simplex_vertex_range(f_simplex)) { simplex.insert(simplex.begin(), vertex); } skeleton_tree.push_back(std::make_pair(simplex, Alpha_complex::filtration(f_simplex))); } return skeleton_tree; } Complex_tree get_star_tree(const Simplex& complex) { Complex_tree star_tree; for (auto f_simplex : Alpha_complex::star_simplex_range(Alpha_complex::find(complex))) { Simplex simplex; for (auto vertex : Alpha_complex::simplex_vertex_range(f_simplex)) { simplex.insert(simplex.begin(), vertex); } star_tree.push_back(std::make_pair(simplex, Alpha_complex::filtration(f_simplex))); } return star_tree; } Complex_tree get_coface_tree(const Simplex& complex, int dimension) { Complex_tree coface_tree; for (auto f_simplex : Alpha_complex::cofaces_simplex_range(Alpha_complex::find(complex), dimension)) { Simplex simplex; for (auto vertex : Alpha_complex::simplex_vertex_range(f_simplex)) { simplex.insert(simplex.begin(), vertex); } coface_tree.push_back(std::make_pair(simplex, Alpha_complex::filtration(f_simplex))); } return coface_tree; } std::vector get_point(int vh) { std::vector vd; try { Point_d ph = Alpha_complex::get_point(vh); for (auto coord = ph.cartesian_begin(); coord < ph.cartesian_end(); coord++) vd.push_back(*coord); } catch (std::out_of_range outofrange) { // std::out_of_range is thrown in case not found. Other exceptions must be re-thrown } return vd; } }; } // namespace alpha_complex } // namespace Gudhi #endif // ALPHA_COMPLEX_INTERFACE_H