/* This file is part of the Gudhi Library. The Gudhi library * (Geometric Understanding in Higher Dimensions) is a generic C++ * library for computational topology. * * Author(s): Mathieu Carriere * * Copyright (C) 2018 INRIA * * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation, either version 3 of the License, or * (at your option) any later version. * * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with this program. If not, see . */ #ifndef INCLUDE_KERNELS_INTERFACE_H_ #define INCLUDE_KERNELS_INTERFACE_H_ #include #include #include #include // for std::pair namespace Gudhi { namespace persistence_diagram { double sw(const std::vector>& diag1, const std::vector>& diag2, double sigma, int N) { Gudhi::Persistence_representations::Sliced_Wasserstein sw1(diag1, sigma, N); Gudhi::Persistence_representations::Sliced_Wasserstein sw2(diag2, sigma, N); return sw1.compute_scalar_product(sw2); } std::vector > sw_matrix(const std::vector > >& s1, const std::vector > >& s2, double sigma, int N){ std::vector > matrix; std::vector ss1; int num_diag_1 = s1.size(); for(int i = 0; i < num_diag_1; i++){Gudhi::Persistence_representations::Sliced_Wasserstein sw1(s1[i], sigma, N); ss1.push_back(sw1);} std::vector ss2; int num_diag_2 = s2.size(); for(int i = 0; i < num_diag_2; i++){Gudhi::Persistence_representations::Sliced_Wasserstein sw2(s2[i], sigma, N); ss2.push_back(sw2);} for(int i = 0; i < num_diag_1; i++){ std::cout << 100.0*i/num_diag_1 << " %" << std::endl; std::vector ps; for(int j = 0; j < num_diag_2; j++) ps.push_back(ss1[i].compute_scalar_product(ss2[j])); matrix.push_back(ps); } return matrix; } } // namespace persistence_diagram } // namespace Gudhi #endif // INCLUDE_KERNELS_INTERFACE_H_