""" This file is part of the Gudhi Library - https://gudhi.inria.fr/ - which is released under MIT. See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full license details. Author(s): Yuichi Ike and Masatoshi Takenouchi Copyright (C) 2020 Inria Modification(s): - YYYY/MM Author: Description of the modification """ from gudhi.weighted_rips_complex import WeightedRipsComplex from gudhi.point_cloud.dtm import DTM import numpy as np from scipy.spatial.distance import cdist import pytest def test_dtm_rips_complex(): pts = np.array([[2.0, 2], [0, 1], [3, 4]]) dist = cdist(pts,pts) dtm = DTM(2, q=2, metric="precomputed") r = dtm.fit_transform(dist) w_rips = WeightedRipsComplex(distance_mattix=dist, weights=r) st = w_rips.create_simplex_tree(max_dimension=2) persistence_intervals0 = st.persistence_intervals_in_dimension(0) assert persistence_intervals0 == pytest.approx(np.array([[1.58113883, 2.69917282],[1.58113883, 2.69917282], [1.58113883, float("inf")]]))