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diff --git a/matching/include/phat/helpers/dualize.h b/matching/include/phat/helpers/dualize.h
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-/* Copyright 2013 IST Austria
- Contributed by: Ulrich Bauer, Michael Kerber, Jan Reininghaus
-
- This file is part of PHAT.
-
- PHAT is free software: you can redistribute it and/or modify
- it under the terms of the GNU Lesser General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- PHAT is distributed in the hope that it will be useful,
- but WITHOUT ANY WARRANTY; without even the implied warranty of
- MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- GNU Lesser General Public License for more details.
-
- You should have received a copy of the GNU Lesser General Public License
- along with PHAT. If not, see <http://www.gnu.org/licenses/>. */
-
-#pragma once
-
-#include <phat/helpers/misc.h>
-#include <phat/boundary_matrix.h>
-#include <phat/persistence_pairs.h>
-
-
-namespace phat {
- template< typename Representation >
- void dualize( boundary_matrix< Representation >& boundary_matrix ) {
-
- std::vector< dimension > dual_dims;
- std::vector< std::vector< index > > dual_matrix;
-
- index nr_of_columns = boundary_matrix.get_num_cols();
- dual_matrix.resize( nr_of_columns );
- dual_dims.resize( nr_of_columns );
-
- std::vector< index > dual_sizes( nr_of_columns, 0 );
-
- column temp_col;
- for( index cur_col = 0; cur_col < nr_of_columns; cur_col++ ) {
- boundary_matrix.get_col( cur_col, temp_col );
- for( index idx = 0; idx < (index)temp_col.size(); idx++)
- dual_sizes[ nr_of_columns - 1 - temp_col[ idx ] ]++;
- }
-
- #pragma omp parallel for
- for( index cur_col = 0; cur_col < nr_of_columns; cur_col++ )
- dual_matrix[cur_col].reserve(dual_sizes[cur_col]);
-
- for( index cur_col = 0; cur_col < nr_of_columns; cur_col++ ) {
- boundary_matrix.get_col( cur_col, temp_col );
- for( index idx = 0; idx < (index)temp_col.size(); idx++)
- dual_matrix[ nr_of_columns - 1 - temp_col[ idx ] ].push_back( nr_of_columns - 1 - cur_col );
- }
-
- const dimension max_dim = boundary_matrix.get_max_dim();
- #pragma omp parallel for
- for( index cur_col = 0; cur_col < nr_of_columns; cur_col++ )
- dual_dims[ nr_of_columns - 1 - cur_col ] = max_dim - boundary_matrix.get_dim( cur_col );
-
- #pragma omp parallel for
- for( index cur_col = 0; cur_col < nr_of_columns; cur_col++ )
- std::reverse( dual_matrix[ cur_col ].begin(), dual_matrix[ cur_col ].end() );
-
- boundary_matrix.load_vector_vector( dual_matrix, dual_dims );
- }
-
- inline void dualize_persistence_pairs( persistence_pairs& pairs, const index n ) {
- for (index i = 0; i < pairs.get_num_pairs(); ++i) {
- std::pair< index, index > pair = pairs.get_pair( i );
- pairs.set_pair( i , n - 1 - pair.second, n - 1 - pair.first);
- }
- }
-}