From 6942d80c4d49239bca9cace9833aa74aee11ddcb Mon Sep 17 00:00:00 2001
From: Arnur Nigmetov <nigmetov@tugraz.at>
Date: Tue, 3 Dec 2019 21:14:03 +0100
Subject: Add matching distance code.

---
 matching/include/phat/persistence_pairs.h | 155 ++++++++++++++++++++++++++++++
 1 file changed, 155 insertions(+)
 create mode 100644 matching/include/phat/persistence_pairs.h

(limited to 'matching/include/phat/persistence_pairs.h')

diff --git a/matching/include/phat/persistence_pairs.h b/matching/include/phat/persistence_pairs.h
new file mode 100644
index 0000000..eafc638
--- /dev/null
+++ b/matching/include/phat/persistence_pairs.h
@@ -0,0 +1,155 @@
+/*  Copyright 2013 IST Austria
+    Contributed by: Ulrich Bauer, Michael Kerber, Jan Reininghaus
+
+    This file is part of PHAT.
+
+    PHAT is free software: you can redistribute it and/or modify
+    it under the terms of the GNU Lesser General Public License as published by
+    the Free Software Foundation, either version 3 of the License, or
+    (at your option) any later version.
+
+    PHAT is distributed in the hope that it will be useful,
+    but WITHOUT ANY WARRANTY; without even the implied warranty of
+    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+    GNU Lesser General Public License for more details.
+
+    You should have received a copy of the GNU Lesser General Public License
+    along with PHAT.  If not, see <http://www.gnu.org/licenses/>. */
+
+#pragma once
+
+#include <phat/helpers/misc.h>
+
+namespace phat {
+    class persistence_pairs {
+
+    protected:
+        std::vector< std::pair< index, index > > pairs;
+
+    public:
+        index get_num_pairs() const { 
+            return (index)pairs.size();
+        }
+
+        void append_pair( index birth, index death ) {
+            pairs.push_back( std::make_pair( birth, death ) );
+        }
+
+        std::pair< index, index > get_pair( index idx ) const {
+            return pairs[ idx ];
+        }
+
+        void set_pair( index idx, index birth, index death )  {
+            pairs[ idx ] = std::make_pair( birth, death );
+        }
+        
+        void clear() {
+            pairs.clear();
+        }
+
+        void sort() {
+            std::sort( pairs.begin(), pairs.end() );
+        }
+
+        // Loads the persistence pairs from given file in asci format 
+        // Format: nr_pairs % newline % birth1 % death1 % newline % birth2 % death2 % newline ...
+        bool load_ascii( std::string filename ) {
+            std::ifstream input_stream( filename.c_str() );
+            if( input_stream.fail() )
+                return false;
+
+            int64_t nr_pairs;
+            input_stream >> nr_pairs;
+            pairs.clear();
+            for( index idx = 0; idx < nr_pairs; idx++ ) {
+                int64_t birth;
+                input_stream >> birth;
+                int64_t death;
+                input_stream >> death;
+                append_pair(  (index)birth,  (index)death );
+            }
+
+            input_stream.close();
+            return true;
+        }
+
+        // Saves the persistence pairs to given file in binary format 
+        // Format: nr_pairs % newline % birth1 % death1 % newline % birth2 % death2 % newline ...
+        bool save_ascii( std::string filename ) {
+            std::ofstream output_stream( filename.c_str() );
+            if( output_stream.fail() )
+                return false;
+
+            this->sort();
+            output_stream << get_num_pairs() << std::endl;
+            for( std::size_t idx = 0; idx < pairs.size(); idx++ ) {
+                output_stream << pairs[idx].first << " " << pairs[idx].second << std::endl;
+            }
+
+            output_stream.close();
+            return true;
+        }
+
+        // Loads the persistence pairs from given file in binary format 
+        // Format: nr_pairs % birth1 % death1 % birth2 % death2 ...
+        bool load_binary( std::string filename ) {
+            std::ifstream input_stream( filename.c_str(), std::ios_base::binary | std::ios_base::in );
+            if( input_stream.fail() )
+                return false;
+
+            int64_t nr_pairs;
+            input_stream.read( (char*)&nr_pairs, sizeof( int64_t ) );
+            for( index idx = 0; idx < nr_pairs; idx++ ) {
+                int64_t birth;
+                input_stream.read( (char*)&birth, sizeof( int64_t ) );
+                int64_t death;
+                input_stream.read( (char*)&death, sizeof( int64_t ) );
+                append_pair(  (index)birth,  (index)death );
+            }
+
+            input_stream.close();
+            return true;
+        }
+
+        // Saves the persistence pairs to given file in binary format 
+        // Format: nr_pairs % birth1 % death1 % birth2 % death2 ...
+        bool save_binary( std::string filename ) {
+            std::ofstream output_stream( filename.c_str(), std::ios_base::binary | std::ios_base::out );
+            if( output_stream.fail() )
+                return false;
+
+            this->sort();
+            int64_t nr_pairs = get_num_pairs();
+            output_stream.write( (char*)&nr_pairs, sizeof( int64_t ) );
+            for( std::size_t idx = 0; idx < pairs.size(); idx++ ) {
+                int64_t birth = pairs[ idx ].first;
+                output_stream.write( (char*)&birth, sizeof( int64_t ) );
+                int64_t death = pairs[ idx ].second;
+                output_stream.write( (char*)&death, sizeof( int64_t ) );
+            }
+
+            output_stream.close();
+            return true;
+        }
+
+        bool operator==( persistence_pairs& other_pairs ) {
+            this->sort();
+            other_pairs.sort();
+            if( pairs.size() != (std::size_t)other_pairs.get_num_pairs() )
+                return false;
+
+            for( index idx = 0; idx < (index)pairs.size(); idx++ )
+                if( get_pair( idx ) != other_pairs.get_pair( idx ) )
+                    return false;
+
+            return true;
+        }
+
+        bool operator!=( persistence_pairs& other_pairs ) {
+            return !( *this == other_pairs );
+        }
+    };
+    
+
+    
+}
-- 
cgit v1.2.3