summaryrefslogtreecommitdiff
path: root/matching/include/common_util.h
blob: b2ee22d07d17281b5a99e931236e5f69a8f1440c (plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
#ifndef MATCHING_DISTANCE_COMMON_UTIL_H
#define MATCHING_DISTANCE_COMMON_UTIL_H

#include <cassert>
#include <vector>
#include <utility>
#include <cmath>
#include <ostream>
#include <sstream>
#include <string>
#include <map>

#include "common_defs.h"
#include "phat/helpers/misc.h"


namespace md {


    using Real = double;
    using RealVec = std::vector<Real>;
    using Index = phat::index;
    using IndexVec = std::vector<Index>;

    static constexpr Real pi = M_PI;

    using Column = std::vector<Index>;

    struct IntPoint {
        Index x;
        Index y;

        IntPoint(Index x, Index y) :x(x), y(y) { }

        IntPoint() :x(0), y(0) { }

        inline bool operator==(const IntPoint& v) const
        {
            return this->x == v.x && this->y == v.y;
        }

        // compare both coordinates, as needed in persistence
        // do not overload operator<, requirements are not satisfied
        inline bool is_less(const IntPoint& other, bool strict = false) const
        {
            if (x <= other.x and y <= other.y) {
                if (strict) {
                    return x != other.x or y != other.y;
                }
                else {
                    return true;
                }
            }
            return false;
        }
    };


    struct Point {
        Real x;
        Real y;

        Point(Real x = 0, Real y = 0)
                :x(x), y(y) { }

        inline Real norm() const { return sqrt(x * x + y * y); }

        inline void normalize()
        {
            Real nor = norm();
            x /= nor;
            y /= nor;
        }

        inline void translate(Real a)
        {
            x += a;
            y += a;
        }

        inline bool operator==(const Point& v) const
        {
            return this->x == v.x && this->y == v.y;
        }

        // compare both coordinates, as needed in persistence
        // do not overload operator<, requirements are not satisfied
        inline bool is_less(const Point& other, bool strict = false) const
        {
            if (x <= other.x and y <= other.y) {
                if (strict) {
                    return x != other.x or y != other.y;
                }
                else {
                    return true;
                }
            }
            return false;
        }
    };

    using PointVec = std::vector<Point>;

    Point operator+(const Point& u, const Point& v);

    Point operator-(const Point& u, const Point& v);

    Point least_upper_bound(const Point& u, const Point& v);

    Point greatest_lower_bound(const Point& u, const Point& v);

    Point max_point();

    Point min_point();

    std::ostream& operator<<(std::ostream& ostr, const Point& vec);

    Real L_infty(const Point& v);

    Real l_2_norm(const Point& v);

    Real l_2_dist(const Point& x, const Point& y);

    Real l_infty_dist(const Point& x, const Point& y);

    using Interval = std::pair<Real, Real>;

    // return minimal interval that contains both a and b
    inline Interval minimal_covering_interval(Interval a, Interval b)
    {
        return {std::min(a.first, b.first), std::max(a.second, b.second)};
    }

    // to keep diagrams in all dimensions
    // TODO: store in Hera format?
    class DiagramKeeper {
    public:
        using DiagramPoint = std::pair<Real, Real>;
        using Diagram = std::vector<DiagramPoint>;

        DiagramKeeper() { };

        void add_point(int dim, Real birth, Real death);

        Diagram get_diagram(int dim) const;

        void clear() { data_.clear(); }

    private:
        std::map<int, Diagram> data_;
    };

    using Diagram = std::vector<std::pair<Real, Real>>;

    template<typename C>
    std::string container_to_string(const C& cont)
    {
        std::stringstream ss;
        ss << "[";
        int i = 0;
        for (const auto& x : cont) {
            i++;
            ss << x;
            if (i != (int) cont.size())
                ss << ", ";
        }
        ss << "]";
        return ss.str();
    }

    int gcd(int a, int b);

    struct Rational {
        int numerator {0};
        int denominator {1};
        Rational() = default;
        Rational(int n, int d) : numerator(n / gcd(n, d)), denominator(d / gcd(n, d)) {}
        Rational(std::pair<int, int> p) : Rational(p.first, p.second) {}
        Rational(int n) : numerator(n), denominator(1) {}
        Real to_real() const { return (Real)numerator / (Real)denominator; }
        void reduce();
        Rational& operator+=(const Rational& rhs);
        Rational& operator-=(const Rational& rhs);
        Rational& operator*=(const Rational& rhs);
        Rational& operator/=(const Rational& rhs);
    };

    using namespace std::rel_ops;

    bool operator==(const Rational& a, const Rational& b);
    bool operator<(const Rational& a, const Rational& b);
    std::ostream& operator<<(std::ostream& os, const Rational& a);

    // arithmetic
    Rational operator+(Rational a, const Rational& b);
    Rational operator-(Rational a, const Rational& b);
    Rational operator*(Rational a, const Rational& b);
    Rational operator/(Rational a, const Rational& b);

    Rational reduce(Rational frac);

    Rational midpoint(Rational a, Rational b);

    bool ignore_line(const std::string& s);
//    bool is_less(Rational a, Rational b);
//    bool is_leq(Rational a, Rational b);
//    bool is_greater(Rational a, Rational b);
//    bool is_geq(Rational a, Rational b);

    // split string by delimeter
    template<typename Out>
    void split_by_delim(const std::string &s, char delim, Out result) {
        std::stringstream ss(s);
        std::string item;
        while (std::getline(ss, item, delim)) {
            *(result++) = item;
        }
    }

    inline std::vector<std::string> split_by_delim(const std::string &s, char delim) {
        std::vector<std::string> elems;
        split_by_delim(s, delim, std::back_inserter(elems));
        return elems;
    }


}

#endif //MATCHING_DISTANCE_COMMON_UTIL_H