From d7677b1f3f5ceee9cfdb5275ef00cbf79a714122 Mon Sep 17 00:00:00 2001 From: Bryn Keller Date: Mon, 7 Mar 2016 13:51:48 -0800 Subject: Python interface to PHAT --- README.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'README.md') diff --git a/README.md b/README.md index b953afa..9a30ffa 100644 --- a/README.md +++ b/README.md @@ -7,7 +7,7 @@ Ulrich Bauer, Michael Kerber, Jan Reininghaus ## Contributors: ## -Hubert Wagner +Hubert Wagner, Bryn Keller ## Downloads: ## * [PHAT, v1.4.0](https://drive.google.com/uc?id=0B7Yz6TPEpiGEWmNyeVFsNXgtUGc&export=download) @@ -138,4 +138,4 @@ References: 1. H.Edelsbrunner, J.Harer: Computational Topology, An Introduction. American Mathematical Society, 2010, ISBN 0-8218-4925-5 2. V.de Silva, D.Morozov, M.Vejdemo-Johansson: Dualities in persistent (co)homology. Inverse Problems 27, 2011 3. C.Chen, M.Kerber: Persistent Homology Computation With a Twist. 27th European Workshop on Computational Geometry, 2011. -4. U.Bauer, M.Kerber, J.Reininghaus: Clear and Compress: Computing Persistent Homology in Chunks. [http://arxiv.org/pdf/1303.0477.pdf arXiv:1303.0477] \ No newline at end of file +4. U.Bauer, M.Kerber, J.Reininghaus: Clear and Compress: Computing Persistent Homology in Chunks. [http://arxiv.org/pdf/1303.0477.pdf arXiv:1303.0477] -- cgit v1.2.3 From 2627c54de7891fbb5b9c3df72167d8c117058561 Mon Sep 17 00:00:00 2001 From: Ulrich Bauer Date: Fri, 9 Dec 2016 00:23:59 +0100 Subject: preparing for 1.5 release --- README.md | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) (limited to 'README.md') diff --git a/README.md b/README.md index 9a30ffa..f166ee2 100644 --- a/README.md +++ b/README.md @@ -1,4 +1,4 @@ -# PHAT (Persistent Homology Algorithm Toolbox), v1.4.0 # +# PHAT (Persistent Homology Algorithm Toolbox), v1.5.0 # Copyright 2013, 2014 IST Austria ## Project Founders: ## @@ -10,7 +10,8 @@ Ulrich Bauer, Michael Kerber, Jan Reininghaus Hubert Wagner, Bryn Keller ## Downloads: ## -* [PHAT, v1.4.0](https://drive.google.com/uc?id=0B7Yz6TPEpiGEWmNyeVFsNXgtUGc&export=download) +* [PHAT, v1.5.0](https://bitbucket.org/phat-code/phat/get/v1.5.0.zip) +* [PHAT, v1.4.1](https://bitbucket.org/phat-code/phat/get/v1.4.1.zip) * [PHAT, v1.3.0](https://drive.google.com/uc?id=0B7Yz6TPEpiGEMGFNQ3FPX3ltelk&export=download) * [PHAT, v1.2.1](https://drive.google.com/uc?id=0B7Yz6TPEpiGENE9KUnhUSFdFQUk&export=download) * [benchmark data](https://drive.google.com/uc?id=0B7Yz6TPEpiGERGZFbjlXaUt1ZWM&export=download) -- cgit v1.2.3 From beadd363d0a78cea8718a605ed1364feb790770c Mon Sep 17 00:00:00 2001 From: Bryn Keller Date: Thu, 8 Dec 2016 15:52:34 -0800 Subject: Updated readme.md to mention the Python bindings, set python bindings version number to 1.5.0 to match main project version --- README.md | 4 ++++ setup.py | 4 ++-- 2 files changed, 6 insertions(+), 2 deletions(-) (limited to 'README.md') diff --git a/README.md b/README.md index 9a30ffa..0f83bc9 100644 --- a/README.md +++ b/README.md @@ -133,6 +133,10 @@ Supported Platforms: * Visual Studio 2008 and 2012 (2010 untested) * GCC version 4.4. and higher +## Python Bindings ## +We provide bindings for Python 3.x and 2.7.12+, which are installable using `pip`. Please see +the Python-specific README.rst in the `python` folder of this repository for details. + References: 1. H.Edelsbrunner, J.Harer: Computational Topology, An Introduction. American Mathematical Society, 2010, ISBN 0-8218-4925-5 diff --git a/setup.py b/setup.py index 6d082d7..1ce0e51 100644 --- a/setup.py +++ b/setup.py @@ -51,11 +51,11 @@ if sys.version_info < (3,4,0): setup( name='phat', - version='0.0.1', + version='1.5.0', author='Bryn Keller', author_email='bryn.keller@intel.com', url='https://bitbucket.org/phat-code/phat', - description='Python bindings for PHAT', + description='Python bindings for PHAT, the C++ based Persistent Homology Algorithm Toolbox', license = 'LGPL', keywords='algebraic-topology PHAT distributed topology persistent-homology', long_description=long_description, -- cgit v1.2.3 From 316c554d0258870eacadcd28313cc68468856cff Mon Sep 17 00:00:00 2001 From: Ulrich Bauer Date: Thu, 5 Jan 2017 07:45:01 +0100 Subject: added PHAT paper reference --- README.md | 15 ++++++++------- 1 file changed, 8 insertions(+), 7 deletions(-) (limited to 'README.md') diff --git a/README.md b/README.md index e942f95..83daebc 100644 --- a/README.md +++ b/README.md @@ -1,15 +1,15 @@ # PHAT (Persistent Homology Algorithm Toolbox), v1.5.0 # Copyright 2013, 2014 IST Austria -## Project Founders: ## +## Project Founders ## Ulrich Bauer, Michael Kerber, Jan Reininghaus -## Contributors: ## +## Contributors ## Hubert Wagner, Bryn Keller -## Downloads: ## +## Downloads ## * [PHAT, v1.5.0](https://bitbucket.org/phat-code/phat/get/v1.5.0.zip) * [PHAT, v1.4.1](https://bitbucket.org/phat-code/phat/get/v1.4.1.zip) * [PHAT, v1.3.0](https://drive.google.com/uc?id=0B7Yz6TPEpiGEMGFNQ3FPX3ltelk&export=download) @@ -17,7 +17,7 @@ Hubert Wagner, Bryn Keller * [benchmark data](https://drive.google.com/uc?id=0B7Yz6TPEpiGERGZFbjlXaUt1ZWM&export=download) * [benchmark data 2](https://drive.google.com/uc?id=0B7Yz6TPEpiGEWE55X3RuM3JjZ3M&export=download) -## Description: ## +## Description ## This software library contains methods for computing the persistence pairs of a filtered cell complex represented by an ordered boundary matrix with Z2 coefficients. @@ -96,7 +96,7 @@ pairs.get_pair(...) A simple example that demonstrates this functionality can be found in `src/simple_example.cpp` -## File Formats: ## +## File Formats ## The library supports input and output in ascii and binary format through the methods `[load|save]_[ascii|binary]` in the classes `boundary_matrix` @@ -138,9 +138,10 @@ Supported Platforms: We provide bindings for Python 3.x and 2.7.12+, which are installable using `pip`. Please see the Python-specific README.rst in the `python` folder of this repository for details. -References: +## References ## 1. H.Edelsbrunner, J.Harer: Computational Topology, An Introduction. American Mathematical Society, 2010, ISBN 0-8218-4925-5 2. V.de Silva, D.Morozov, M.Vejdemo-Johansson: Dualities in persistent (co)homology. Inverse Problems 27, 2011 3. C.Chen, M.Kerber: Persistent Homology Computation With a Twist. 27th European Workshop on Computational Geometry, 2011. -4. U.Bauer, M.Kerber, J.Reininghaus: Clear and Compress: Computing Persistent Homology in Chunks. [http://arxiv.org/pdf/1303.0477.pdf arXiv:1303.0477] +4. U.Bauer, M.Kerber, J.Reininghaus: Clear and Compress: Computing Persistent Homology in Chunks. [http://arxiv.org/pdf/1303.0477.pdf](arXiv:1303.0477) +5. U.Bauer, M.Kerber, J.Reininghausc, H.Wagner: Phat – Persistent Homology Algorithms Toolbox. Journal of Symbolic Computation 78, 2017, p. 76–90. \ No newline at end of file -- cgit v1.2.3