/* Copyright 2013 IST Austria Contributed by: Ulrich Bauer, Michael Kerber, Jan Reininghaus This file is part of PHAT. PHAT is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. PHAT is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License along with PHAT. If not, see . */ #pragma once #include #include namespace phat { // Note: We could even make the rep generic in the underlying Const representation // But I cannot imagine that anything else than vector> would // make sense template< typename PivotColumn > class abstract_pivot_column : public vector_vector { public: protected: typedef vector_vector Base; typedef PivotColumn pivot_column; // For parallization purposes, it could be more than one full column mutable thread_local_storage< pivot_column > _pivot_columns; mutable thread_local_storage< index > pos_of_pivot_columns; pivot_column& get_pivot_column() const { return _pivot_columns(); } bool is_represented_by_pivot_column( index idx ) const { return pos_of_pivot_columns() == idx; } void unset_pos_of_pivot_column() { index idx = pos_of_pivot_columns(); if( idx != -1 ) { _pivot_columns().get_column_and_clear( this->matrix[ idx ] ); } pos_of_pivot_columns() = -1; } void represent_by_pivot_column( index idx ) { pos_of_pivot_columns() = idx; get_pivot_column().add_column( matrix[ idx ] ); } public: void _set_num_cols( index nr_of_columns ) { #pragma omp parallel for for( int tid = 0; tid < omp_get_num_threads(); tid++ ) { _pivot_columns[ tid ].init( nr_of_columns ); pos_of_pivot_columns[ tid ] = -1; } Base::_set_num_cols( nr_of_columns ); } // replaces(!) content of 'col' with boundary of given index void _get_col( index idx, column& col ) const { col.clear(); if( is_represented_by_pivot_column( idx ) ) { pivot_column& pivot_column = get_pivot_column(); pivot_column.get_column_and_clear( col ); pivot_column.add_column( col ); } else { Base::_get_col( idx, col ); } } // true iff boundary of given idx is empty bool _is_empty( index idx ) const { return is_represented_by_pivot_column( idx ) ? get_pivot_column().empty() : Base::_is_empty( idx ); } // largest row index of given column idx (new name for lowestOne()) index _get_max_index( index idx ) const { if( is_represented_by_pivot_column( idx ) ) { pivot_column& pivot_column = get_pivot_column(); if( pivot_column.empty() ) { return -1; } else { return pivot_column.max_index(); } } else { return Base::_get_max_index( idx ); } } // adds column 'source' to column 'target' void _add_to( index source, index target ) { if( !is_represented_by_pivot_column( target ) ) { unset_pos_of_pivot_column(); represent_by_pivot_column( target ); } get_pivot_column().add_column( matrix[source] ); } // clears given column void _clear( index idx ) { if( is_represented_by_pivot_column( idx ) ) { column dummy; get_pivot_column().get_column_and_clear(dummy); } else { Base::_clear( idx ); } } void _set_col( index idx, const column& col ) { if( is_represented_by_pivot_column( idx ) ) { column dummy; pivot_column& pivot_column = get_pivot_column(); pivot_column.get_column_and_clear( dummy ); pivot_column.add_column( col ); } else { Base::_set_col( idx, col ); } } // removes the maximal index of a column void _remove_max( index idx ) { _toggle( idx, _get_max_index( idx ) ); } //// toggles given index pair void _toggle( index col_idx, index row_idx ) { if( !is_represented_by_pivot_column( col_idx ) ) { unset_pos_of_pivot_column(); represent_by_pivot_column( col_idx ); } get_pivot_column().add_index( row_idx ); } // syncronizes all data structures (essential for openmp stuff) // has to be called before and after any multithreaded access! void _sync() { #pragma omp parallel for for( int tid = 0; tid < omp_get_num_threads(); tid++ ) unset_pos_of_pivot_column(); } }; }