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authorRémi Flamary <remi.flamary@gmail.com>2020-04-24 18:25:17 +0200
committerRémi Flamary <remi.flamary@gmail.com>2020-04-24 18:25:17 +0200
commit71e79844a54ea88babd04b01688766a17b3de614 (patch)
tree2f1e641eb3b330925ef988017416e2ab83c21fc2 /README.md
parent956df7af113d62eab1d65f6db5fbb81897dc49c6 (diff)
update proper links form readme
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@@ -22,29 +22,29 @@ POT provides the following generic OT solvers (links to examples):
* [OT Network Simplex solver](https://pythonot.github.io/auto_examples/plot_OT_1D.html) for the linear program/ Earth Movers Distance [1] .
* [Conditional gradient](https://pythonot.github.io/auto_examples/plot_optim_OTreg.html) [6] and [Generalized conditional gradient](https://pythonot.github.io/auto_examples/plot_optim_OTreg.html) for regularized OT [7].
* Entropic regularization OT solver with [Sinkhorn Knopp Algorithm](https://pythonot.github.io/auto_examples/plot_OT_1D.html) [2] , stabilized version [9] [10], greedy Sinkhorn [22] and [Screening Sinkhorn [26] ](https://pythonot.github.io/auto_examples/plot_screenkhorn_1D.html) with optional GPU implementation (requires cupy).
-* Bregman projections for [Wasserstein barycenter](https://pythonot.github.io/auto_examples/plot_barycenter_lp_vs_entropic.html) [3], [convolutional barycenter](https://pythonot.github.io/auto_examples/plot_convolutional_barycenter.html) [21] and unmixing [4].
+* Bregman projections for [Wasserstein barycenter](https://pythonot.github.io/auto_examples/barycenters/plot_barycenter_lp_vs_entropic.html) [3], [convolutional barycenter](https://pythonot.github.io/auto_examples/barycenters/plot_convolutional_barycenter.html) [21] and unmixing [4].
* Sinkhorn divergence [23] and entropic regularization OT from empirical data.
* [Smooth optimal transport solvers](https://pythonot.github.io/auto_examples/plot_OT_1D_smooth.html) (dual and semi-dual) for KL and squared L2 regularizations [17].
-* Non regularized [Wasserstein barycenters [16] ](https://pythonot.github.io/auto_examples/plot_barycenter_lp_vs_entropic.html)) with LP solver (only small scale).
-* [Gromov-Wasserstein distances](https://pythonot.github.io/auto_examples/plot_gromov.html) and [GW barycenters](https://pythonot.github.io/auto_examples/plot_gromov_barycenter.html) (exact [13] and regularized [12])
- * [Fused-Gromov-Wasserstein distances solver](https://pythonot.github.io/auto_examples/plot_fgw.html#sphx-glr-auto-examples-plot-fgw-py) and [FGW barycenters](https://pythonot.github.io/auto_examples/plot_barycenter_fgw.html) [24]
+* Non regularized [Wasserstein barycenters [16] ](https://pythonot.github.io/auto_examples/barycenters/plot_barycenter_lp_vs_entropic.html)) with LP solver (only small scale).
+* [Gromov-Wasserstein distances](https://pythonot.github.io/auto_examples/gromov/plot_gromov.html) and [GW barycenters](https://pythonot.github.io/auto_examples/gromov/plot_gromov_barycenter.html) (exact [13] and regularized [12])
+ * [Fused-Gromov-Wasserstein distances solver](https://pythonot.github.io/auto_examples/gromov/plot_fgw.html#sphx-glr-auto-examples-plot-fgw-py) and [FGW barycenters](https://pythonot.github.io/auto_examples/gromov/plot_barycenter_fgw.html) [24]
* [Stochastic solver](https://pythonot.github.io/auto_examples/plot_stochastic.html) for Large-scale Optimal Transport (semi-dual problem [18] and dual problem [19])
-* Non regularized [free support Wasserstein barycenters](https://pythonot.github.io/auto_examples/plot_free_support_barycenter.html) [20].
-* [Unbalanced OT](https://pythonot.github.io/auto_examples/plot_UOT_1D.html) with KL relaxation and [barycenter](https://pythonot.github.io/auto_examples/plot_UOT_barycenter_1D.html) [10, 25].
-* [Partial Wasserstein and Gromov-Wasserstein](https://pythonot.github.io/auto_examples/plot_partial_wass_and_gromov.html) (exact [29] and entropic [3]
+* Non regularized [free support Wasserstein barycenters](https://pythonot.github.io/auto_examples/barycenters/plot_free_support_barycenter.html) [20].
+* [Unbalanced OT](https://pythonot.github.io/auto_examples/unbalanced-partial/plot_UOT_1D.html) with KL relaxation and [barycenter](https://pythonot.github.io/auto_examples/unbalanced-partial/plot_UOT_barycenter_1D.html) [10, 25].
+* [Partial Wasserstein and Gromov-Wasserstein](https://pythonot.github.io/auto_examples/unbalanced-partial/plot_partial_wass_and_gromov.html) (exact [29] and entropic [3]
formulations).
POT provides the following Machine Learning related solvers:
* [Optimal transport for domain
adaptation](https://pythonot.github.io/auto_examples/plot_otda_classes.html)
- with [group lasso regularization](https://pythonot.github.io/auto_examples/plot_otda_classes.html), [Laplacian regularization](https://pythonot.github.io/auto_examples/plot_otda_laplacian.html) [5] [30] and [semi
- supervised setting](https://pythonot.github.io/auto_examples/plot_otda_semi_supervised.html).
-* [Linear OT mapping](https://pythonot.github.io/auto_examples/plot_otda_linear_mapping.html) [14] and [Joint OT mapping estimation](https://pythonot.github.io/auto_examples/plot_otda_mapping.html) [8].
-* [Wasserstein Discriminant Analysis](https://pythonot.github.io/auto_examples/plot_WDA.html) [11] (requires autograd + pymanopt).
-* [JCPOT algorithm for multi-source domain adaptation with target shift](https://pythonot.github.io/auto_examples/plot_otda_jcpot.html) [27].
+ with [group lasso regularization](https://pythonot.github.io/auto_examples/domain-adaptation/plot_otda_classes.html), [Laplacian regularization](https://pythonot.github.io/auto_examples/domain-adaptation/plot_otda_laplacian.html) [5] [30] and [semi
+ supervised setting](https://pythonot.github.io/auto_examples/domain-adaptation/plot_otda_semi_supervised.html).
+* [Linear OT mapping](https://pythonot.github.io/auto_examples/domain-adaptation/plot_otda_linear_mapping.html) [14] and [Joint OT mapping estimation](https://pythonot.github.io/auto_examples/plot_otda_mapping.html) [8].
+* [Wasserstein Discriminant Analysis](https://pythonot.github.io/auto_examples/domain-adaptation/plot_WDA.html) [11] (requires autograd + pymanopt).
+* [JCPOT algorithm for multi-source domain adaptation with target shift](https://pythonot.github.io/auto_examples/domain-adaptation/plot_otda_jcpot.html) [27].
-Some demonstrations are available in the [documentation](https://pythonot.github.io/auto_examples/index.html).
+Some other examples are available in the [documentation](https://pythonot.github.io/auto_examples/index.html).
#### Using and citing the toolbox
@@ -153,7 +153,7 @@ ba=ot.barycenter(A,M,reg) # reg is regularization parameter
### Examples and Notebooks
-The examples folder contain several examples and use case for the library. The full documentation is available on [https://PythonOT.github.io/](https://PythonOT.github.io/).
+The examples folder contain several examples and use case for the library. The full documentation with examples and output is available on [https://PythonOT.github.io/](https://PythonOT.github.io/).
## Acknowledgements