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authorHuy Tran <huytran82125@gmail.com>2023-03-22 08:13:53 +0100
committerGitHub <noreply@github.com>2023-03-22 08:13:53 +0100
commit897026ea1f5c35ba9e881433bc61490e70776b8c (patch)
tree2cedb9c1a0faa971f6e78c5574d7411ce8e55079 /README.md
parentb9ed7b1650475420cc5bbec6c31476cc098790d5 (diff)
[MRG] CO-Optimal Transport solver (#447)
* Allow warmstart in sinkhorn and sinkhorn_log * Added argument for warmstart of dual vectors in Sinkhorn-based methods in * Add the number of the PR * [WIP] CO-Optimal Transport * Revert "[WIP] CO-Optimal Transport" This reverts commit f3d36b2705013409ac69b346585e311bc25fcfb7. * reformat with PEP8 * Fix W291 trailing whitespace error in pep8 test * Rearange position of warmstart argument and edit its description * Implementation of CO-Optimal Transport * Optimize code and edit documentation * fix backend bug in test cases * fix backend bug * fix backend bug * Add examples on COOT * Modify API and edit example * Edit API * minor edit of examples and release * fix bug in coot * fix doc examples * more fix of doc * restart CI * reordering ref * add more tests * add more tests * add test verbose * fix PEP8 bug * fix PEP8 bug * fix PEP8 bug * fix pytest bug * edit doc for better display --------- Co-authored-by: Rémi Flamary <remi.flamary@gmail.com> Co-authored-by: Alexandre Gramfort <agramfort@fb.com>
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@@ -276,15 +276,15 @@ You can also post bug reports and feature requests in Github issues. Make sure t
[35] Deshpande, I., Hu, Y. T., Sun, R., Pyrros, A., Siddiqui, N., Koyejo, S., ... & Schwing, A. G. (2019). [Max-sliced wasserstein distance and its use for gans](https://openaccess.thecvf.com/content_CVPR_2019/papers/Deshpande_Max-Sliced_Wasserstein_Distance_and_Its_Use_for_GANs_CVPR_2019_paper.pdf). In Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition (pp. 10648-10656).
-[36] Liutkus, A., Simsekli, U., Majewski, S., Durmus, A., & Stöter, F. R.
-(2019, May). [Sliced-Wasserstein flows: Nonparametric generative modeling
-via optimal transport and diffusions](http://proceedings.mlr.press/v97/liutkus19a/liutkus19a.pdf). In International Conference on
+[36] Liutkus, A., Simsekli, U., Majewski, S., Durmus, A., & Stöter, F. R.
+(2019, May). [Sliced-Wasserstein flows: Nonparametric generative modeling
+via optimal transport and diffusions](http://proceedings.mlr.press/v97/liutkus19a/liutkus19a.pdf). In International Conference on
Machine Learning (pp. 4104-4113). PMLR.
[37] Janati, H., Cuturi, M., Gramfort, A. [Debiased sinkhorn barycenters](http://proceedings.mlr.press/v119/janati20a/janati20a.pdf) Proceedings of the 37th International
Conference on Machine Learning, PMLR 119:4692-4701, 2020
-[38] C. Vincent-Cuaz, T. Vayer, R. Flamary, M. Corneli, N. Courty, [Online Graph
+[38] C. Vincent-Cuaz, T. Vayer, R. Flamary, M. Corneli, N. Courty, [Online Graph
Dictionary Learning](https://arxiv.org/pdf/2102.06555.pdf), International Conference on Machine Learning (ICML), 2021.
[39] Gozlan, N., Roberto, C., Samson, P. M., & Tetali, P. (2017). [Kantorovich duality for general transport costs and applications](https://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.712.1825&rep=rep1&type=pdf). Journal of Functional Analysis, 273(11), 3327-3405.
@@ -305,4 +305,6 @@ Dictionary Learning](https://arxiv.org/pdf/2102.06555.pdf), International Confer
[47] Chowdhury, S., & Mémoli, F. (2019). [The gromov–wasserstein distance between networks and stable network invariants](https://academic.oup.com/imaiai/article/8/4/757/5627736). Information and Inference: A Journal of the IMA, 8(4), 757-787.
-[48] Cédric Vincent-Cuaz, Rémi Flamary, Marco Corneli, Titouan Vayer, Nicolas Courty (2022). [Semi-relaxed Gromov-Wasserstein divergence and applications on graphs](https://openreview.net/pdf?id=RShaMexjc-x). International Conference on Learning Representations (ICLR), 2022. \ No newline at end of file
+[48] Cédric Vincent-Cuaz, Rémi Flamary, Marco Corneli, Titouan Vayer, Nicolas Courty (2022). [Semi-relaxed Gromov-Wasserstein divergence and applications on graphs](https://openreview.net/pdf?id=RShaMexjc-x). International Conference on Learning Representations (ICLR), 2022.
+
+[49] Redko, I., Vayer, T., Flamary, R., and Courty, N. (2020). [CO-Optimal Transport](https://proceedings.neurips.cc/paper/2020/file/cc384c68ad503482fb24e6d1e3b512ae-Paper.pdf). Advances in Neural Information Processing Systems, 33.