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authorRémi Flamary <remi.flamary@gmail.com>2018-08-29 14:10:04 +0200
committerRémi Flamary <remi.flamary@gmail.com>2018-08-29 14:10:04 +0200
commitf12153c0c1be6f6377ace0050201409ec1b7e829 (patch)
treec0117cd22135582e5484564fd14a0197587df6db /docs/source/auto_examples/plot_free_support_barycenter.rst
parent3bc0420b97616062f0a42f412db13545ec7fda3a (diff)
update documentation examples
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+
+.. _sphx_glr_auto_examples_plot_free_support_barycenter.py:
+
+
+====================================================
+2D free support Wasserstein barycenters of distributions
+====================================================
+
+Illustration of 2D Wasserstein barycenters if discributions that are weighted
+sum of diracs.
+
+
+
+
+.. code-block:: python
+
+
+ # Author: Vivien Seguy <vivien.seguy@iip.ist.i.kyoto-u.ac.jp>
+ #
+ # License: MIT License
+
+ import numpy as np
+ import matplotlib.pylab as pl
+ import ot
+
+
+
+
+
+
+
+
+Generate data
+ -------------
+%% parameters and data generation
+
+
+
+.. code-block:: python
+
+ N = 3
+ d = 2
+ measures_locations = []
+ measures_weights = []
+
+ for i in range(N):
+
+ n_i = np.random.randint(low=1, high=20) # nb samples
+
+ mu_i = np.random.normal(0., 4., (d,)) # Gaussian mean
+
+ A_i = np.random.rand(d, d)
+ cov_i = np.dot(A_i, A_i.transpose()) # Gaussian covariance matrix
+
+ x_i = ot.datasets.make_2D_samples_gauss(n_i, mu_i, cov_i) # Dirac locations
+ b_i = np.random.uniform(0., 1., (n_i,))
+ b_i = b_i / np.sum(b_i) # Dirac weights
+
+ measures_locations.append(x_i)
+ measures_weights.append(b_i)
+
+
+
+
+
+
+
+
+Compute free support barycenter
+-------------
+
+
+
+.. code-block:: python
+
+
+ k = 10 # number of Diracs of the barycenter
+ X_init = np.random.normal(0., 1., (k, d)) # initial Dirac locations
+ b = np.ones((k,)) / k # weights of the barycenter (it will not be optimized, only the locations are optimized)
+
+ X = ot.lp.free_support_barycenter(measures_locations, measures_weights, X_init, b)
+
+
+
+
+
+
+
+
+Plot data
+---------
+
+
+
+.. code-block:: python
+
+
+ pl.figure(1)
+ for (x_i, b_i) in zip(measures_locations, measures_weights):
+ color = np.random.randint(low=1, high=10 * N)
+ pl.scatter(x_i[:, 0], x_i[:, 1], s=b * 1000, label='input measure')
+ pl.scatter(X[:, 0], X[:, 1], s=b * 1000, c='black', marker='^', label='2-Wasserstein barycenter')
+ pl.title('Data measures and their barycenter')
+ pl.legend(loc=0)
+ pl.show()
+
+
+
+.. image:: /auto_examples/images/sphx_glr_plot_free_support_barycenter_001.png
+ :align: center
+
+
+
+
+**Total running time of the script:** ( 0 minutes 0.129 seconds)
+
+
+
+.. only :: html
+
+ .. container:: sphx-glr-footer
+
+
+ .. container:: sphx-glr-download
+
+ :download:`Download Python source code: plot_free_support_barycenter.py <plot_free_support_barycenter.py>`
+
+
+
+ .. container:: sphx-glr-download
+
+ :download:`Download Jupyter notebook: plot_free_support_barycenter.ipynb <plot_free_support_barycenter.ipynb>`
+
+
+.. only:: html
+
+ .. rst-class:: sphx-glr-signature
+
+ `Gallery generated by Sphinx-Gallery <https://sphinx-gallery.readthedocs.io>`_