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diff --git a/docs/source/auto_examples/plot_OTDA_2D.rst b/docs/source/auto_examples/plot_OTDA_2D.rst new file mode 100644 index 0000000..b535bb0 --- /dev/null +++ b/docs/source/auto_examples/plot_OTDA_2D.rst @@ -0,0 +1,175 @@ + + +.. _sphx_glr_auto_examples_plot_OTDA_2D.py: + + +============================== +OT for empirical distributions +============================== + + + + + +.. rst-class:: sphx-glr-horizontal + + + * + + .. image:: /auto_examples/images/sphx_glr_plot_OTDA_2D_001.png + :scale: 47 + + * + + .. image:: /auto_examples/images/sphx_glr_plot_OTDA_2D_002.png + :scale: 47 + + * + + .. image:: /auto_examples/images/sphx_glr_plot_OTDA_2D_003.png + :scale: 47 + + * + + .. image:: /auto_examples/images/sphx_glr_plot_OTDA_2D_004.png + :scale: 47 + + + + + +.. code-block:: python + + + import numpy as np + import matplotlib.pylab as pl + import ot + + + + #%% parameters + + n=150 # nb bins + + xs,ys=ot.datasets.get_data_classif('3gauss',n) + xt,yt=ot.datasets.get_data_classif('3gauss2',n) + + a,b = ot.unif(n),ot.unif(n) + # loss matrix + M=ot.dist(xs,xt) + #M/=M.max() + + #%% plot samples + + pl.figure(1) + + pl.subplot(2,2,1) + pl.scatter(xs[:,0],xs[:,1],c=ys,marker='+',label='Source samples') + pl.legend(loc=0) + pl.title('Source distributions') + + pl.subplot(2,2,2) + pl.scatter(xt[:,0],xt[:,1],c=yt,marker='o',label='Target samples') + pl.legend(loc=0) + pl.title('target distributions') + + pl.figure(2) + pl.imshow(M,interpolation='nearest') + pl.title('Cost matrix M') + + + #%% OT estimation + + # EMD + G0=ot.emd(a,b,M) + + # sinkhorn + lambd=1e-1 + Gs=ot.sinkhorn(a,b,M,lambd) + + + # Group lasso regularization + reg=1e-1 + eta=1e0 + Gg=ot.da.sinkhorn_lpl1_mm(a,ys.astype(np.int),b,M,reg,eta) + + + #%% visu matrices + + pl.figure(3) + + pl.subplot(2,3,1) + pl.imshow(G0,interpolation='nearest') + pl.title('OT matrix ') + + pl.subplot(2,3,2) + pl.imshow(Gs,interpolation='nearest') + pl.title('OT matrix Sinkhorn') + + pl.subplot(2,3,3) + pl.imshow(Gg,interpolation='nearest') + pl.title('OT matrix Group lasso') + + pl.subplot(2,3,4) + ot.plot.plot2D_samples_mat(xs,xt,G0,c=[.5,.5,1]) + pl.scatter(xs[:,0],xs[:,1],c=ys,marker='+',label='Source samples') + pl.scatter(xt[:,0],xt[:,1],c=yt,marker='o',label='Target samples') + + + pl.subplot(2,3,5) + ot.plot.plot2D_samples_mat(xs,xt,Gs,c=[.5,.5,1]) + pl.scatter(xs[:,0],xs[:,1],c=ys,marker='+',label='Source samples') + pl.scatter(xt[:,0],xt[:,1],c=yt,marker='o',label='Target samples') + + pl.subplot(2,3,6) + ot.plot.plot2D_samples_mat(xs,xt,Gg,c=[.5,.5,1]) + pl.scatter(xs[:,0],xs[:,1],c=ys,marker='+',label='Source samples') + pl.scatter(xt[:,0],xt[:,1],c=yt,marker='o',label='Target samples') + + #%% sample interpolation + + xst0=n*G0.dot(xt) + xsts=n*Gs.dot(xt) + xstg=n*Gg.dot(xt) + + pl.figure(4) + pl.subplot(2,3,1) + + + pl.scatter(xt[:,0],xt[:,1],c=yt,marker='o',label='Target samples',alpha=0.5) + pl.scatter(xst0[:,0],xst0[:,1],c=ys,marker='+',label='Transp samples',s=30) + pl.title('Interp samples') + pl.legend(loc=0) + + pl.subplot(2,3,2) + + + pl.scatter(xt[:,0],xt[:,1],c=yt,marker='o',label='Target samples',alpha=0.5) + pl.scatter(xsts[:,0],xsts[:,1],c=ys,marker='+',label='Transp samples',s=30) + pl.title('Interp samples Sinkhorn') + + pl.subplot(2,3,3) + + pl.scatter(xt[:,0],xt[:,1],c=yt,marker='o',label='Target samples',alpha=0.5) + pl.scatter(xstg[:,0],xstg[:,1],c=ys,marker='+',label='Transp samples',s=30) + pl.title('Interp samples Grouplasso') +**Total running time of the script:** ( 0 minutes 17.372 seconds) + + + +.. container:: sphx-glr-footer + + + .. container:: sphx-glr-download + + :download:`Download Python source code: plot_OTDA_2D.py <plot_OTDA_2D.py>` + + + + .. container:: sphx-glr-download + + :download:`Download Jupyter notebook: plot_OTDA_2D.ipynb <plot_OTDA_2D.ipynb>` + +.. rst-class:: sphx-glr-signature + + `Generated by Sphinx-Gallery <http://sphinx-gallery.readthedocs.io>`_ |