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2022-04-05[MRG] Update examples in the doc (#359)Rémi Flamary
* add transparent color logo * add transparent color logo * move screenkhorn * move stochastic and install ffmpeg on circleci * try something * add sudo * install ffmpeg before python * cleanup examples * test svg scrapper * add animation for reg path * better example OT sivergence * update ttles and add plots * update free support * proper figure indexes * have less frame sin animation * update readme and release file * add tests for python 3.10
2022-02-23[MRG] Build POT against oldest-supported-numpy (local PR) (#349)Rémi Flamary
* Configure setup to compile against oldest supported numpy version using the meta-package: https://pypi.org/project/oldest-supported-numpy/ - * Set minimum Python requirement to `>=3.7` in setup.py since !328 removed Python 3.6 support * Fix typo in pyproject.toml - * Update setup.py * Update setup.py and * build wheels * remove install dependencies for wheels building and build wheels * Apply suggestions from code review Co-authored-by: David M. Ghiurco <9147386+davidghiurco@users.noreply.github.com> * correct timing test add info in release file and build wheels * pep8 and Co-authored-by: David Ghiurco <9147386+davidghiurco@users.noreply.github.com>
2021-12-27[MRG] Remove python 3.6 properly for all wheel building (#328)Rémi Flamary
* remove python3.6 properly
2021-12-27[MRG] Remove Python3.6 from wheels (#327)Rémi Flamary
* remove wheel 3.6
2021-12-26[MRG] Release 0.8.1 (#325)Rémi Flamary
* update delease file and add it to doc ith mystè_parser * typos in release file * update PR template * test debug doc build * test debug doc build * wrog circleci * set proper version number * add numpy 1.20 constraint * remove python 3.6 deprecated in december * add python 3.10 * debug pip on windows * proper yml * remoe 3.10 becauqe of troch * next try * try distutils * back * try something * new stuf * debug yaml * test back to old vriso f numpy * try something * windows is worksing?
2021-12-15[WIP] Update version in to 0.8.1dev and release file (#323)Rémi Flamary
* update delease file and add it to doc ith mystè_parser * typos in release file * update PR template
2021-12-09[MRG] Tensorflow backend & Benchmarker & Myst_parser (#316)Nathan Cassereau
* First batch of tf methods (to be continued) * Second batch of method (yet to debug) * tensorflow for cpu * add tf requirement * pep8 + bug * small changes * attempt to solve pymanopt bug with tf2 * attempt #2 * attempt #3 * attempt 4 * docstring * correct pep8 violation introduced in merge conflicts resolution * attempt 5 * attempt 6 * just a random try * Revert "just a random try" This reverts commit 8223e768bfe33635549fb66cca2267514a60ebbf. * GPU tests for tensorflow * pep8 * attempt to solve issue with m2r2 * Remove transpose backend method * first draft of benchmarker (need to correct time measurement) * prettier bench table * Bitsize and prettier device methods * prettified table bench * Bug corrected (results were mixed up in the final table) * Better perf counter (for GPU support) * pep8 * EMD bench * solve bug if no GPU available * pep8 * warning about tensorflow numpy api being required in the backend.py docstring * Bug solve in backend docstring * not covering code which requires a GPU * Tensorflow gradients manipulation tested * Number of warmup runs is now customizable * typo * Remove some warnings while building docs * Change prettier_device to device_type in backend * Correct JAX mistakes preventing to see the CPU if a GPU is present * Attempt to solve JAX bug in case no GPU is found * Reworked benchmarks order and results storage & clear GPU after usage by benchmark * Add bench to backend docstring * better benchs * remove useless stuff * Better device_type * Now using MYST_PARSER and solving links issue in the README.md / online docs
2021-11-19[MRG] Solve bug of contribution link in docs + automated insert of readme in ↵Nathan Cassereau
doc (#301) * first try * bug solve * attempt to use m2r2 * More elegant dependency * readme.rst now generated automatically from readme.md * weird attempt * Revert "weird attempt" This reverts commit b45f0e6495148877ad3e93ad608b3b0cfe9bbb16. * fixing readme links * Revert "fixing readme links" This reverts commit 0c6ca7612ea297674a3afc50f8e6538c58c27701. * full link for readme * correct CONTRIBUTING guidelines mistakes
2021-11-05[MRG] Release 0.8 (#289)Rémi Flamary
* working on release * test circleci * try again * cleanup circle ci run * add all PR and releant Issues * update doc * thanks idris * update version + add pyproject.toml * test pyproject.toml * revert tests * build wheels * use windows-latest for tests * add tests python 3.10 * build all whels * all versions * build all wheels * build all wheels * cleanup pep8 and minimal acions * forst shot text release * bettr text * stuff * release text updated * update manifest to allow build from source * update doc again * update release
2021-10-27[WIP] POT build without installing cython first (#293)Rémi Flamary
* test build with no dep * cleaning up stuff * build wheels
2021-06-17[MRG] Speedup tests (#262)Rémi Flamary
* speedup tests * add color to tests and timings * add test unbalanced * stupid missing -
2021-06-01[MRG] POT numpy/torch/jax backends (#249)Rémi Flamary
* add numpy and torch backends * stat sets on functions * proper import * install recent torch on windows * install recent torch on windows * now testing all functions in backedn * add jax backedn * clenaup windowds * proper convert for jax backedn * pep8 * try again windows tests * test jax conversion * try proper widows tests * emd fuction ses backedn * better test partial OT * proper tests to_numpy and teplate Backend * pep8 * pep8 x2 * feaking sinkhorn works with torch * sinkhorn2 compatible * working ot.emd2 * important detach * it should work * jax autodiff emd * pep8 * no tast same for jax * new independat tests per backedn * freaking pep8 * add tests for gradients * deprecate ot.gpu * worging dist function * working dist * dist done in backedn * not in * remove indexing * change accuacy for jax * first pull backend * projection simplex * projection simplex * projection simplex * projection simplex no ci * projection simplex no ci * projection simplex no ci * pep8 * add backedn discusion to quickstart guide * projection simplex no ci * projection simplex no ci * projection simplex no ci * pep8 + better doc * proper links * corect doctest * big debug documentation * doctest again * doctest again bis * doctest again ter (last one or i kill myself) * backend test + doc proj simplex * correction test_utils * correction test_utils * correction cumsum * correction flip * correction flip v2 * more debug * more debug * more debug + pep8 * pep8 * argh * proj_simplex * backedn works for sort * proj simplex * jax sucks * update doc * Update test/test_utils.py Co-authored-by: Alexandre Gramfort <alexandre.gramfort@m4x.org> * Update docs/source/quickstart.rst Co-authored-by: Alexandre Gramfort <alexandre.gramfort@m4x.org> * Update docs/source/quickstart.rst Co-authored-by: Alexandre Gramfort <alexandre.gramfort@m4x.org> * Update docs/source/quickstart.rst Co-authored-by: Alexandre Gramfort <alexandre.gramfort@m4x.org> * Update docs/source/readme.rst Co-authored-by: Alexandre Gramfort <alexandre.gramfort@m4x.org> * Update test/test_utils.py Co-authored-by: Alexandre Gramfort <alexandre.gramfort@m4x.org> * Update ot/utils.py Co-authored-by: Alexandre Gramfort <alexandre.gramfort@m4x.org> * Update docs/source/readme.rst Co-authored-by: Alexandre Gramfort <alexandre.gramfort@m4x.org> * Update ot/lp/__init__.py Co-authored-by: Alexandre Gramfort <alexandre.gramfort@m4x.org> * begin comment alex * comment alex part 2 * optimize test gromov * proj_simplex on vectors * add awesome gradient decsnt example on the weights * pep98 of course * proof read example by alex * pep8 again * encoding oos in translation * correct legend Co-authored-by: Nicolas Courty <ncourty@irisa.fr> Co-authored-by: Alexandre Gramfort <alexandre.gramfort@m4x.org>
2021-05-27Build wheels on ARM and in PR (#253)Rémi Flamary
2021-04-21[MRG] Fixes issue #239 (deprecated numpy types) (#244)Rémi Flamary
* remove warning numpy int? * use long long * stoupid mistake * cleanup double test run in PR from local branch
2021-04-19[MRG] Add tests in pull request (#241)Rémi Flamary
* add pull request again
2021-04-19[MRG] Make tests runs on push (#240)Rémi Flamary
* run test for every push * rename action to tests
2021-04-16[MRG] build wheels with arm64 (raspberry PI) (#238)Rémi Flamary
* add optional build wheels in PR * test if in build wheels * remove wheels builders * update build wheels et tets run * add big sur * add arm64 wheels and build wheels * build wheels please * build wheels * build wheels with proper file now * build wheels debuged * remove big sur * build wheels debuged * add weekly build and test build wheels and build all wheels * whange name weekly build * add potntial no ci and no pep8 flags * change name of actions
2021-04-15[MRG] Add new python versions for tests (also macos and windows) (#237)Rémi Flamary
* update python versions and add macosx bigsur * add versions macosx * remove big sur and add 3.7 in macos * disable paramell on macosx * remove double run of tests that was running both on push and pr
2021-04-15[WIP] Update build_wheels to new version and allow force build in PR for ↵Rémi Flamary
debug (#236) * add optional build wheels in PR * test if in build wheels * remove wheels builders * update build wheels et tets run
2020-10-22[MRG] Cleanup minimal build and add separate build for pep8 (#210)Rémi Flamary
* cleanup requiorement minimal * add pep8 build * cleanup sklearn * skip test if no sklearn * debug build yaml * comment error out in test (test sklearn) * maybe small stuff for better robustness : copy the sub-array * bump verison minimal build * update version strict requireent * update version strict requirement last change
2020-05-22[MRG] Templates (#181)Ayush Karnawat
* Add a PR template * move github contrib + code of conduct * fix links * add feature request template * ask for gpu info * address comments * add gitter in README
2020-05-04back to build wheels on masterRémi Flamary
2020-05-04really remove pypyRémi Flamary
2020-05-04remove whelels pypyRémi Flamary
2020-05-04test build wheelsRémi Flamary
2020-05-04[WIP] Improved docs and changed scipy version (#163)Romain Tavenard
* Improved docs and changed scipy version * Fixed dependency bug in setup.py * dependencies set to minimal versions for tests * add requirements file * added minimal version build for scipy (testing 1.2) * bugfix in minimal deps build * (yet another) bugfix in minimal deps build * minimal deps now reflect README.md * minimal deps: no autograd nor pymanopt * refactored workflow names * minimal deps: no doctests * minimal deps: numpy 1.16 * trigger GH Actions on PR * better merge * re-add minimal-deps... * bugfix in yaml * enforce np>=1.16 * enforce scipy and cython versions too * requires / install_requires * requires / install_requires / requires * setup_requires Co-authored-by: Rémi Flamary <remi.flamary@gmail.com>
2020-05-04rename files and add pull request for proper status in prRémi Flamary
2020-04-24build wheels on push to masterRémi Flamary
2020-04-23Merge branch 'master' into rm_travisRémi Flamary
2020-04-23trigger CIsAlexandre Gramfort
2020-04-23final versionRémi Flamary
2020-04-23trigger CIsAlexandre Gramfort
2020-04-23remove pipy for macosxRémi Flamary
2020-04-23proper macos buildRémi Flamary
2020-04-23add platforms and remove ppRémi Flamary
2020-04-23Merge branch 'master' into rm_travisRémi Flamary
2020-04-23[WIP] Issue with sparse emd and adding tests on macos (#158)Nicolas Courty
* First commit-warning removal * remove dense feature * pep8 * pep8 * EMD.h * pep8 again * tic toc tolerance Co-authored-by: Rémi Flamary <remi.flamary@gmail.com>
2020-04-23oupsAlexandre Gramfort
2020-04-23Merge branch 'rm_travis' of github.com:agramfort/POT into rm_travisAlexandre Gramfort
2020-04-23revert changes on GH ymlAlexandre Gramfort
2020-04-23Merge branch 'master' into rm_travisRémi Flamary
2020-04-23set action to release eventRémi Flamary
2020-04-22stick to linux wheels for current releaseRémi Flamary
2020-04-22remove macosxRémi Flamary
2020-04-22debug build wheels windowsRémi Flamary
2020-04-22test build wheels windowsRémi Flamary
2020-04-22propoer ciwb before buildRémi Flamary
2020-04-22force install cythonRémi Flamary
2020-04-22add wheel build actionRémi Flamary
2020-04-22rename circleci redicrector actionRémi Flamary
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