Age | Commit message (Collapse) | Author |
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* Configure setup to compile against oldest supported numpy version using the meta-package: https://pypi.org/project/oldest-supported-numpy/ -
* Set minimum Python requirement to `>=3.7` in setup.py since !328 removed Python 3.6 support
* Fix typo in pyproject.toml -
* Update setup.py
* Update setup.py and
* build wheels
* remove install dependencies for wheels building and build wheels
* Apply suggestions from code review
Co-authored-by: David M. Ghiurco <9147386+davidghiurco@users.noreply.github.com>
* correct timing test add info in release file and build wheels
* pep8 and
Co-authored-by: David Ghiurco <9147386+davidghiurco@users.noreply.github.com>
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* remove python3.6 properly
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* remove wheel 3.6
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* update delease file and add it to doc ith mystè_parser
* typos in release file
* update PR template
* test debug doc build
* test debug doc build
* wrog circleci
* set proper version number
* add numpy 1.20 constraint
* remove python 3.6 deprecated in december
* add python 3.10
* debug pip on windows
* proper yml
* remoe 3.10 becauqe of troch
* next try
* try distutils
* back
* try something
* new stuf
* debug yaml
* test back to old vriso f numpy
* try something
* windows is worksing?
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* update delease file and add it to doc ith mystè_parser
* typos in release file
* update PR template
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* First batch of tf methods (to be continued)
* Second batch of method (yet to debug)
* tensorflow for cpu
* add tf requirement
* pep8 + bug
* small changes
* attempt to solve pymanopt bug with tf2
* attempt #2
* attempt #3
* attempt 4
* docstring
* correct pep8 violation introduced in merge conflicts resolution
* attempt 5
* attempt 6
* just a random try
* Revert "just a random try"
This reverts commit 8223e768bfe33635549fb66cca2267514a60ebbf.
* GPU tests for tensorflow
* pep8
* attempt to solve issue with m2r2
* Remove transpose backend method
* first draft of benchmarker (need to correct time measurement)
* prettier bench table
* Bitsize and prettier device methods
* prettified table bench
* Bug corrected (results were mixed up in the final table)
* Better perf counter (for GPU support)
* pep8
* EMD bench
* solve bug if no GPU available
* pep8
* warning about tensorflow numpy api being required in the backend.py docstring
* Bug solve in backend docstring
* not covering code which requires a GPU
* Tensorflow gradients manipulation tested
* Number of warmup runs is now customizable
* typo
* Remove some warnings while building docs
* Change prettier_device to device_type in backend
* Correct JAX mistakes preventing to see the CPU if a GPU is present
* Attempt to solve JAX bug in case no GPU is found
* Reworked benchmarks order and results storage & clear GPU after usage by benchmark
* Add bench to backend docstring
* better benchs
* remove useless stuff
* Better device_type
* Now using MYST_PARSER and solving links issue in the README.md / online docs
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doc (#301)
* first try
* bug solve
* attempt to use m2r2
* More elegant dependency
* readme.rst now generated automatically from readme.md
* weird attempt
* Revert "weird attempt"
This reverts commit b45f0e6495148877ad3e93ad608b3b0cfe9bbb16.
* fixing readme links
* Revert "fixing readme links"
This reverts commit 0c6ca7612ea297674a3afc50f8e6538c58c27701.
* full link for readme
* correct CONTRIBUTING guidelines mistakes
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* working on release
* test circleci
* try again
* cleanup circle ci run
* add all PR and releant Issues
* update doc
* thanks idris
* update version + add pyproject.toml
* test pyproject.toml
* revert tests
* build wheels
* use windows-latest for tests
* add tests python 3.10
* build all whels
* all versions
* build all wheels
* build all wheels
* cleanup pep8 and minimal acions
* forst shot text release
* bettr text
* stuff
* release text updated
* update manifest to allow build from source
* update doc again
* update release
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* test build with no dep
* cleaning up stuff
* build wheels
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* speedup tests
* add color to tests and timings
* add test unbalanced
* stupid missing -
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* add numpy and torch backends
* stat sets on functions
* proper import
* install recent torch on windows
* install recent torch on windows
* now testing all functions in backedn
* add jax backedn
* clenaup windowds
* proper convert for jax backedn
* pep8
* try again windows tests
* test jax conversion
* try proper widows tests
* emd fuction ses backedn
* better test partial OT
* proper tests to_numpy and teplate Backend
* pep8
* pep8 x2
* feaking sinkhorn works with torch
* sinkhorn2 compatible
* working ot.emd2
* important detach
* it should work
* jax autodiff emd
* pep8
* no tast same for jax
* new independat tests per backedn
* freaking pep8
* add tests for gradients
* deprecate ot.gpu
* worging dist function
* working dist
* dist done in backedn
* not in
* remove indexing
* change accuacy for jax
* first pull backend
* projection simplex
* projection simplex
* projection simplex
* projection simplex no ci
* projection simplex no ci
* projection simplex no ci
* pep8
* add backedn discusion to quickstart guide
* projection simplex no ci
* projection simplex no ci
* projection simplex no ci
* pep8 + better doc
* proper links
* corect doctest
* big debug documentation
* doctest again
* doctest again bis
* doctest again ter (last one or i kill myself)
* backend test + doc proj simplex
* correction test_utils
* correction test_utils
* correction cumsum
* correction flip
* correction flip v2
* more debug
* more debug
* more debug + pep8
* pep8
* argh
* proj_simplex
* backedn works for sort
* proj simplex
* jax sucks
* update doc
* Update test/test_utils.py
Co-authored-by: Alexandre Gramfort <alexandre.gramfort@m4x.org>
* Update docs/source/quickstart.rst
Co-authored-by: Alexandre Gramfort <alexandre.gramfort@m4x.org>
* Update docs/source/quickstart.rst
Co-authored-by: Alexandre Gramfort <alexandre.gramfort@m4x.org>
* Update docs/source/quickstart.rst
Co-authored-by: Alexandre Gramfort <alexandre.gramfort@m4x.org>
* Update docs/source/readme.rst
Co-authored-by: Alexandre Gramfort <alexandre.gramfort@m4x.org>
* Update test/test_utils.py
Co-authored-by: Alexandre Gramfort <alexandre.gramfort@m4x.org>
* Update ot/utils.py
Co-authored-by: Alexandre Gramfort <alexandre.gramfort@m4x.org>
* Update docs/source/readme.rst
Co-authored-by: Alexandre Gramfort <alexandre.gramfort@m4x.org>
* Update ot/lp/__init__.py
Co-authored-by: Alexandre Gramfort <alexandre.gramfort@m4x.org>
* begin comment alex
* comment alex part 2
* optimize test gromov
* proj_simplex on vectors
* add awesome gradient decsnt example on the weights
* pep98 of course
* proof read example by alex
* pep8 again
* encoding oos in translation
* correct legend
Co-authored-by: Nicolas Courty <ncourty@irisa.fr>
Co-authored-by: Alexandre Gramfort <alexandre.gramfort@m4x.org>
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* remove warning numpy int?
* use long long
* stoupid mistake
* cleanup double test run in PR from local branch
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* add pull request again
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* run test for every push
* rename action to tests
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* add optional build wheels in PR
* test if in build wheels
* remove wheels builders
* update build wheels et tets run
* add big sur
* add arm64 wheels and build wheels
* build wheels please
* build wheels
* build wheels with proper file now
* build wheels debuged
* remove big sur
* build wheels debuged
* add weekly build and test build wheels and build all wheels
* whange name weekly build
* add potntial no ci and no pep8 flags
* change name of actions
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* update python versions and add macosx bigsur
* add versions macosx
* remove big sur and add 3.7 in macos
* disable paramell on macosx
* remove double run of tests that was running both on push and pr
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debug (#236)
* add optional build wheels in PR
* test if in build wheels
* remove wheels builders
* update build wheels et tets run
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* cleanup requiorement minimal
* add pep8 build
* cleanup sklearn
* skip test if no sklearn
* debug build yaml
* comment error out in test (test sklearn)
* maybe small stuff for better robustness : copy the sub-array
* bump verison minimal build
* update version strict requireent
* update version strict requirement last change
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* Add a PR template
* move github contrib + code of conduct
* fix links
* add feature request template
* ask for gpu info
* address comments
* add gitter in README
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* Improved docs and changed scipy version
* Fixed dependency bug in setup.py
* dependencies set to minimal versions for tests
* add requirements file
* added minimal version build for scipy (testing 1.2)
* bugfix in minimal deps build
* (yet another) bugfix in minimal deps build
* minimal deps now reflect README.md
* minimal deps: no autograd nor pymanopt
* refactored workflow names
* minimal deps: no doctests
* minimal deps: numpy 1.16
* trigger GH Actions on PR
* better merge
* re-add minimal-deps...
* bugfix in yaml
* enforce np>=1.16
* enforce scipy and cython versions too
* requires / install_requires
* requires / install_requires / requires
* setup_requires
Co-authored-by: Rémi Flamary <remi.flamary@gmail.com>
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* First commit-warning removal
* remove dense feature
* pep8
* pep8
* EMD.h
* pep8 again
* tic toc tolerance
Co-authored-by: Rémi Flamary <remi.flamary@gmail.com>
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