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2020-08-24[WIP] add introductory example of OT, EMD and Sinkhorn (#191)aboisbunon
* add introductory example of OT, EMD and Sinkhorn * improve figure and try complying with pep8 * autopep8 * change markdown elements to rst * try solving issue with images * fix issue with images * add a section on varying the sinkhorn hyperparameter * add Sinkhorn algorithm and discussion for comparison between EMD and Sinkhorn * autopep8 again * add subsections and modify figure sizes/shapes * fix bug with print * correct some typos * remove computational time comparison * autopep8 again... Co-authored-by: Aurelie Boisbunon <abb@mydatamodels.com>
2020-08-24Check if alpha is not None when restricting it to be at most 1 (#199)Panayiotis Panayiotou
* Check if alpha is not None when restricting it to be at most 1 * Write check more clearly * Add no regression test for line search armijo returning None for alpha Co-authored-by: Rémi Flamary <remi.flamary@gmail.com>
2020-08-24Fix to BaseTransport.transform_labels() (#208)Samarth Mishra
* Fix to BaseTransport.transform_labels() Issue #207 * Fix - forgot to commit
2020-07-20Correct documentation for support barycenter (#201)AdrienCorenflos
* example for log treatment in bregman.py * Improve doc * Revert "example for log treatment in bregman.py" This reverts commit 9f51c14e * Add comments by Flamary * Delete repetitive description * Added raw string to avoid pbs with backslashes
2020-06-22Revert "[WIP] Update bregman.py : barycenter_sinkhorn function (#195)" (#196)Rémi Flamary
This reverts commit b2eae39e8a422b18ecc3fadc08bc909ee1dae55f.
2020-06-22[WIP] Update bregman.py : barycenter_sinkhorn function (#195)Rémi Flamary
* Update bregman.py * correct call to function Co-authored-by: FerdinandGns <56926826+FerdinandGns@users.noreply.github.com>
2020-05-26Restrict Armijo linesearch function step to be at most 1 (#189)Panayiotis Panayiotou
Thanks for the modification @panpan2
2020-05-25Delete _config.yml (#186)Rémi Flamary
2020-05-22[MRG] Templates (#181)Ayush Karnawat
* Add a PR template * move github contrib + code of conduct * fix links * add feature request template * ask for gpu info * address comments * add gitter in README
2020-05-19Update codecov.yml (#183)Rémi Flamary
ignore gpu for code coverage (it cannot be tested)
2020-05-19[MRG] Codecov options + remove 2.7 (#178)Ayush Karnawat
* cleanup setup * Ignore files in codecov * Remove externals module * change name to compile_args * bye py2.7 (you will be missed) * glob to ignore folders
2020-05-15Merge pull request #175 from djsutherland/mac-ccRémi Flamary
[WIP] only mangle CC/etc if on mac and not told not to
2020-05-15remove CC for macosx (test)Rémi Flamary
2020-05-15Merge branch 'master' into mac-ccRémi Flamary
2020-05-14Merge pull request #174 from djsutherland/setup-requiresRémi Flamary
[MRG] Fix requirements
2020-05-13rename I to img in examples, since flake8 complains now (#176)D.J. Sutherland
2020-05-13only mangle CC/etc if on mac and not told not toD.J. Sutherland
2020-05-13fix requirementsD.J. Sutherland
2020-05-13rename I to img in examples, since flake8 complains nowD.J. Sutherland
2020-05-11Update README.mdRémi Flamary
make build badge on master only
2020-05-06Merge pull request #170 from AdrienCorenflos/masterRémi Flamary
fix array bounds issue
2020-05-05fix failing test - cur_idx needs to be incremented by 1 after the loopAdrienCorenflos
2020-05-05Some improvements for platform compatibilityAdrienCorenflos
2020-05-05break before exceeding array sizeAdrienCorenflos
2020-05-05Merge pull request #167 from PythonOT/doc_v0.7Rémi Flamary
[WIP] Reproducible example WDA and remove dense from doc
2020-05-05update release in docRémi Flamary
2020-05-05Merge branch 'master' into doc_v0.7Rémi Flamary
2020-05-05Merge pull request #168 from PythonOT/ncourty-patch-1Rémi Flamary
Update RELEASES.md
2020-05-05Update RELEASES.mdNicolas Courty
Co-authored-by: Alexandre Gramfort <alexandre.gramfort@m4x.org>
2020-05-05Update RELEASES.mdNicolas Courty
Co-authored-by: Alexandre Gramfort <alexandre.gramfort@m4x.org>
2020-05-05Update RELEASES.mdNicolas Courty
2020-05-05really reproducipble WDA exampleRémi Flamary
2020-05-05correct year in mccan reference for partial otRémi Flamary
2020-05-05Merge branch 'doc_v0.7' of github.com:PythonOT/POT into doc_v0.7Rémi Flamary
2020-05-05add release 0.7.0 in docRémi Flamary
2020-05-05Merge branch 'master' into doc_v0.7Rémi Flamary
2020-05-05remove dense from ducumentationRémi Flamary
2020-05-05cleanup WDA example with proper seedsRémi Flamary
2020-05-05Merge pull request #165 from mglisse/nogilRémi Flamary
Add nogil to EMD_wrap
2020-05-04Add nogil to EMD_wrapMarc Glisse
2020-05-04Merge pull request #162 from PythonOT/prepare_v0.7Rémi Flamary
[WIP] Preparing release 0.7.0
2020-05-04back to build wheels on masterRémi Flamary
2020-05-04really remove pypyRémi Flamary
2020-05-04remove whelels pypyRémi Flamary
2020-05-04test build wheelsRémi Flamary
2020-05-04Merge branch 'master' into prepare_v0.7Rémi Flamary
2020-05-04[WIP] Improved docs and changed scipy version (#163)Romain Tavenard
* Improved docs and changed scipy version * Fixed dependency bug in setup.py * dependencies set to minimal versions for tests * add requirements file * added minimal version build for scipy (testing 1.2) * bugfix in minimal deps build * (yet another) bugfix in minimal deps build * minimal deps now reflect README.md * minimal deps: no autograd nor pymanopt * refactored workflow names * minimal deps: no doctests * minimal deps: numpy 1.16 * trigger GH Actions on PR * better merge * re-add minimal-deps... * bugfix in yaml * enforce np>=1.16 * enforce scipy and cython versions too * requires / install_requires * requires / install_requires / requires * setup_requires Co-authored-by: Rémi Flamary <remi.flamary@gmail.com>
2020-05-04Merge branch 'master' into prepare_v0.7Rémi Flamary
2020-05-04Merge pull request #164 from PythonOT/gh-actionRémi Flamary
[MRG] GH Actions with proper status in PR
2020-05-04rename files and add pull request for proper status in prRémi Flamary
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