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2022-08-01[MRG] Solve example throwing an error when executed on a GPU (#391)Nathan Cassereau
* Solve example throwing an error when executed on a GPU * add PR to releases.md * update pep8 command * pep8
2022-07-27[MRG] Free support Sinkhorn barycenters (#387)Eduardo Fernandes Montesuma
* Adding function for computing Sinkhorn Free Support barycenters * Adding exampel on Free Support Sinkhorn Barycenter * Fixing typo on free support sinkhorn barycenter example * Adding info on new Free Support Barycenter solver * Removing extra line so that code follows pep8 * Fixing issues with pep8 in example * Correcting issues with pep8 standards * Adding tests for free support sinkhorn barycenter * Adding section on Sinkhorn barycenter to the example * Changing distributions for the Sinkhorn barycenter example * Removing file that should not be on the last commit * Adding PR number to REALEASES.md * Adding new contributors * Update CONTRIBUTORS.md Co-authored-by: Rémi Flamary <remi.flamary@gmail.com>
2022-06-21[MRG] raise error if mass mismatch in emd2 (#386)clecoz
* Two lines added in the function emd2 to ensure that the distributions have the same mass (same as it already was in the function emd). * The same mass test has been moved inside the function f(b) to be compatible with emd2 with multiple b. * Test added. The function test_emd_dimension_and_mass_mismatch (in test/test_ot.py) has been modified to check for mass mismatch with emd2. * Add PR in releases.md * Merge and add PR in releases.md * Add name in contributors.md * Correction contribution in contributors.md * Move test on mass outside of functions f(b) * Update doc of emd and emd2 Co-authored-by: Camille Le Coz <clecoz@camelot.ipsl.polytechnique.fr> Co-authored-by: Rémi Flamary <remi.flamary@gmail.com>
2022-06-13[MRG] Correct pointer overflow in EMD (#381)Nathan Cassereau
* avoid overflow on openmp version of emd solver * monothread version updated * Fixed typo in readme * added PR in releases * typo in releases.md * added a precision to releases.md * added a precision to releases.md * correct readme * forgot to cast * lower error
2022-06-01[MRG] numItermax in 64 bits in EMD solver (#380)Nathan Cassereau
* Correct test_mm_convergence for cupy * Fix bug where number of iterations is limited to 2^31 * Update RELEASES.md * Replace size_t with long long * Use uint64_t instead of long long
2022-05-13remove calls to cerr (#377)Jay Stanley
typo in releases
2022-05-11[WIP] Graphical tweaks for GWB + fixed seed method for the partial gromov ↵eloitanguy
test (#376) * GWB first solver version * tests + example for gwb (untested) + free_bar doc fix * improved doc, fixed minor bugs, better example visu * minor doc + visu fixes * plot GWB pep8 fix * fixed partial gromov test reproductibility * added an animation for the GWB visu * added PR num * minor doc fixes + better gwb logo * GWB graphical tweaks + better seed method for partial gromov test * fixed PR number * refixed seed issue * seed fix fix fix Co-authored-by: Rémi Flamary <remi.flamary@gmail.com>
2022-05-06[MRG] Torch random generator not working for Cuda tensor (#373)Nathan Cassereau
* Solve bug * Update release file
2022-05-06[WIP] Generalized Wasserstein Barycenters (#372)eloitanguy
* GWB first solver version * tests + example for gwb (untested) + free_bar doc fix * improved doc, fixed minor bugs, better example visu * minor doc + visu fixes * plot GWB pep8 fix * fixed partial gromov test reproductibility * added an animation for the GWB visu * added PR num * minor doc fixes + better gwb logo
2022-04-21[MRG] Release 8.2 (#365)Rémi Flamary
* release text and number * add examples in release fil build wheels * switch gallery to release * add much needed contributors file * debug circleci * une line of logos * working logo * back to stable sphinx galery
2022-04-11[MRG] Center gradients for mass of emd2 and gw2 (#363)Rémi Flamary
* center gradients for mass of emd2 and gw2 * debug fgw gradient * debug fgw
2022-04-11[MRG] MM algorithms for UOT (#362)Laetitia Chapel
* bugfix * update refs partial OT * fixes small typos in plot_partial_wass_and_gromov * fix small bugs in partial.py * update README * pep8 bugfix * modif doctest * fix bugtests * update on test_partial and test on the numerical precision on ot/partial * resolve merge pb * Delete partial.py * update unbalanced: mm algo+plot * update unbalanced: mm algo+plot * update unbalanced: mm algo+plot * update unbalanced: mm algo+plot * update unbalanced: mm algo+plot * add test mm algo unbalanced OT * add test mm algo unbalanced OT * add test mm algo unbalanced OT * add test mm algo unbalanced OT * add test mm algo unbalanced OT * add test mm algo unbalanced OT * add test mm algo unbalanced OT * add test mm algo unbalanced OT * update unbalanced: mm algo+plot * update unbalanced: mm algo+plot * update releases.md with new MM UOT algorithms Co-authored-by: Rémi Flamary <remi.flamary@gmail.com>
2022-04-07[MRG] Remove deprecated ot.gpu submodule (#361)Rémi Flamary
* remove all cpu submodule and tests * speedup tests gromov
2022-04-05[MRG] Update examples in the doc (#359)Rémi Flamary
* add transparent color logo * add transparent color logo * move screenkhorn * move stochastic and install ffmpeg on circleci * try something * add sudo * install ffmpeg before python * cleanup examples * test svg scrapper * add animation for reg path * better example OT sivergence * update ttles and add plots * update free support * proper figure indexes * have less frame sin animation * update readme and release file * add tests for python 3.10
2022-04-04[WIP] Add backend dual loss and plan computation for stochastic optimization ↵Rémi Flamary
or regularized OT (#360) * add losses and plan computations and exmaple for dual oiptimization * pep8 * add nice exmaple * update awesome example stochasti dual * add all tests * pep8 + speedup exmaple * add release info
2022-03-24[MRG] Add factored coupling (#358)Rémi Flamary
* add gfactored ot * pep8 and add doc * add exmaple for factotred OT * final number of PR * correct test on backends * remove useless loss * better tests
2022-03-24[MRG] Domain adaptation and unbalanced solvers with backend support (#343)Nathan Cassereau
* First draft * Add matrix inverse and square root to backend * Eigen decomposition for older versions of pytorch (1.8.1 and older) * Corrected eigen decomposition for pytorch 1.8.1 and older * Spectral theorem is a thing * Optimization * small optimization * More functions converted * pep8 * remove a warning and prepare torch meshgrid for future torch release (which will change default indexing) * dots and pep8 * Meshgrid corrected for older version and prepared for future versions changes * New backend functions * Base transport * LinearTransport * All transport classes + pep8 * PR added to release file * Jcpot barycenter test * unbalanced with backend * pep8 * bug solve * test of domain adaptation with backends * solve bug for tic toc & macos * solving scipy deprecation warning * solving scipy deprecation warning attempt2 * solving scipy deprecation warning attempt3 * A warning is triggered when a float->int conversion is detected * bug solve * docs * release file updated * Better handling of float->int conversion in EMD * Corrected test for is_floating_point * docs * release file updated * cupy does not allow implicit cast * fromnumpy * added test * test da tf jax * test unbalanced with no provided histogram * using type_as argument in unif function correctly * pep8 * transport plan cast in emd changed behaviour, now trying to cast as histogram's dtype, defaulting to cost matrix Co-authored-by: Rémi Flamary <remi.flamary@gmail.com>
2022-03-18[MRG] Add logo to POT (#357)Rémi Flamary
* add logo code and logo to doc * update release file
2022-03-02[MRG] Gromov_Wasserstein2 not performing backward properly on GPU (#352)Nathan Cassereau
* Resolves gromov wasserstein backward bug * release file updated
2022-02-23[MRG] Proper links in release file in documentation (#350)Rémi Flamary
* propreer links in release file in documentation * add pr in release file
2022-02-23[MRG] Build POT against oldest-supported-numpy (local PR) (#349)Rémi Flamary
* Configure setup to compile against oldest supported numpy version using the meta-package: https://pypi.org/project/oldest-supported-numpy/ - * Set minimum Python requirement to `>=3.7` in setup.py since !328 removed Python 3.6 support * Fix typo in pyproject.toml - * Update setup.py * Update setup.py and * build wheels * remove install dependencies for wheels building and build wheels * Apply suggestions from code review Co-authored-by: David M. Ghiurco <9147386+davidghiurco@users.noreply.github.com> * correct timing test add info in release file and build wheels * pep8 and Co-authored-by: David Ghiurco <9147386+davidghiurco@users.noreply.github.com>
2022-02-11[MRG] GW dictionary learning (#319)Cédric Vincent-Cuaz
* add fgw dictionary learning feature * add fgw dictionary learning feature * plot gromov wasserstein dictionary learning * Update __init__.py * fix pep8 errors exact E501 line too long * fix last pep8 issues * add unitary tests for (F)GW dictionary learning without using autodifferentiable functions * correct tests for (F)GW dictionary learning without using autodiff * correct tests for (F)GW dictionary learning without using autodiff * fix docs and notations * answer to review: improve tests, docs, examples + make node weights optional * fix pep8 and examples * improve docs + tests + thumbnail * make example faster * improve ex * update README.md * make GDL tests faster Co-authored-by: Rémi Flamary <remi.flamary@gmail.com>
2022-02-02[MRG] Add weak OT solver (#341)Rémi Flamary
* add info in release file * update tests * pep8 * add weak OT example * update plot in doc * correction ewample with empirical sinkhorn * better thumbnail * comment from review * update documenation
2022-01-28[MRG] Backend implementation of the free support barycenter (#340)Rémi Flamary
* backend version barycenter * new tests * cleanup release file and doc * f*ing pep8 * remove unused variable
2022-01-21[MRG] Implement Sinkhorn in log-domain for WDA (#336)Jakub Zadrożny
* [MRG] Implement Sinkhorn in log-domain for WDA * for small values of the regularization parameter (reg) the current implementation runs into numerical issues (nans and infs) * this can be resolved by using log-domain implementation of the sinkhorn algorithm * Add feature to RELEASES and contributor name * Add 'sinkhorn_method' parameter to WDA * use the standard Sinkhorn solver by default (faster) * use log-domain Sinkhorn if asked by the user Co-authored-by: Jakub Zadrożny <jz@qed.ai> Co-authored-by: Rémi Flamary <remi.flamary@gmail.com>
2022-01-19[MRG] Fix instantiation of `ValFunction` (which raises a warning with ↵Bastian Rieck
PyTorch) (#338) * Not instantiating `ValFunction` `ValFunction` should not be instantiated since `autograd` functions are supposed to only ever use static methods. This solves a warning message raised by PyTorch. * Updated release information * Fixed PR number
2022-01-14[WIP] Set dev version and add minigallery to quick start guide (#334)Rémi Flamary
* change version and add minigallery in quickstart guide * remove ot.gpu from documentation because it is deprecated and bacckends should be used * start 0.8.2dev and description in releases.md * typo for gallery sinkhorn2 * test better doc update for files in .githib folder
2021-12-31[MRG] Release 0.8.1.0 and correct doc build (#332)Rémi Flamary
* update ersion and change doc build * update release file * debug release of doc * set version number to 0.8.1.0
2021-12-26[MRG] Change numpy version (due to ABI change) (#326)Rémi Flamary
* update delease file and add it to doc ith mystè_parser * typos in release file * update PR template * test debug doc build * test debug doc build * wrog circleci * set proper version number * add numpy 1.20 constraint * remove python 3.6 deprecated in december * add python 3.10 * debug pip on windows * proper yml * remoe 3.10 becauqe of troch * next try * try distutils * back * try something * new stuf * debug yaml * test back to old vriso f numpy * try something * windows is worksing? * proper version numpy * update release file
2021-12-26[MRG] Release 0.8.1 (#325)Rémi Flamary
* update delease file and add it to doc ith mystè_parser * typos in release file * update PR template * test debug doc build * test debug doc build * wrog circleci * set proper version number * add numpy 1.20 constraint * remove python 3.6 deprecated in december * add python 3.10 * debug pip on windows * proper yml * remoe 3.10 becauqe of troch * next try * try distutils * back * try something * new stuf * debug yaml * test back to old vriso f numpy * try something * windows is worksing?
2021-12-15[WIP] Update version in to 0.8.1dev and release file (#323)Rémi Flamary
* update delease file and add it to doc ith mystè_parser * typos in release file * update PR template
2021-11-05[MRG] Release 0.8 (#289)Rémi Flamary
* working on release * test circleci * try again * cleanup circle ci run * add all PR and releant Issues * update doc * thanks idris * update version + add pyproject.toml * test pyproject.toml * revert tests * build wheels * use windows-latest for tests * add tests python 3.10 * build all whels * all versions * build all wheels * build all wheels * cleanup pep8 and minimal acions * forst shot text release * bettr text * stuff * release text updated * update manifest to allow build from source * update doc again * update release
2020-05-05Merge branch 'master' into doc_v0.7Rémi Flamary
2020-05-05Update RELEASES.mdNicolas Courty
Co-authored-by: Alexandre Gramfort <alexandre.gramfort@m4x.org>
2020-05-05Update RELEASES.mdNicolas Courty
Co-authored-by: Alexandre Gramfort <alexandre.gramfort@m4x.org>
2020-05-05Update RELEASES.mdNicolas Courty
2020-05-05add release 0.7.0 in docRémi Flamary
2020-05-04remove whelels pypyRémi Flamary
2020-04-30change release and update reseale fileRémi Flamary
2020-04-24test options sphinx galleryRémi Flamary
2020-04-24add realeasesRémi Flamary
2019-09-09cleanup verison number 1.0-Rémi Flamary
2019-07-08tupos in RELEASES.mdRémi Flamary
2019-07-05update release textRémi Flamary
2019-07-05update classifier + release textRémi Flamary
2018-10-03small release editRémi Flamary
2018-10-03update releases.mdRémi Flamary
2018-09-28update realease.mdRémi Flamary
2018-09-24update doc+notebooks for convolutionalRémi Flamary
2018-08-29aupdate releaseRémi Flamary
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