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2023-03-09[MRG] Semi-relaxed (fused) gromov-wasserstein divergence and improvements of ↵Cédric Vincent-Cuaz
gromov-wasserstein solvers (#431) * maj gw/ srgw/ generic cg solver * correct pep8 on current state * fix bug previous tests * fix pep8 * fix bug srGW constC in loss and gradient * fix doc html * fix doc html * start updating test_optim.py * update tests gromov and optim - plus fix gromov dependencies * add symmetry feature to entropic gw * add symmetry feature to entropic gw * add exemple for sr(F)GW matchings * small stuff * remove (reg,M) from line-search/ complete srgw tests with backend * remove backend repetitions / rename fG to costG/ fix innerlog to True * fix pep8 * take comments into account / new nx parameters still to test * factor (f)gw2 + test new backend parameters in ot.gromov + harmonize stopping criterions * split gromov.py in ot/gromov/ + update test_gromov with helper_backend functions * manual documentaion gromov * remove circular autosummary * trying stuff * debug documentation * alphabetic ordering of module * merge into branch * add note in entropic gw solvers --------- Co-authored-by: Rémi Flamary <remi.flamary@gmail.com>
2022-08-18[MRG] Proper subsections in gallery (#395)Rémi Flamary
* add option for preper subsections * cleanup dodecov ignore * cleanup dodecov ignore
2022-04-05[MRG] Update examples in the doc (#359)Rémi Flamary
* add transparent color logo * add transparent color logo * move screenkhorn * move stochastic and install ffmpeg on circleci * try something * add sudo * install ffmpeg before python * cleanup examples * test svg scrapper * add animation for reg path * better example OT sivergence * update ttles and add plots * update free support * proper figure indexes * have less frame sin animation * update readme and release file * add tests for python 3.10
2022-03-18[MRG] Add logo to POT (#357)Rémi Flamary
* add logo code and logo to doc * update release file
2022-01-17[MRG] Default pygment color for doc (#335)Rémi Flamary
* back to default pygment * add images back * move static images and make it work
2022-01-14[WIP] Set dev version and add minigallery to quick start guide (#334)Rémi Flamary
* change version and add minigallery in quickstart guide * remove ot.gpu from documentation because it is deprecated and bacckends should be used * start 0.8.2dev and description in releases.md * typo for gallery sinkhorn2 * test better doc update for files in .githib folder
2021-12-09[MRG] Tensorflow backend & Benchmarker & Myst_parser (#316)Nathan Cassereau
* First batch of tf methods (to be continued) * Second batch of method (yet to debug) * tensorflow for cpu * add tf requirement * pep8 + bug * small changes * attempt to solve pymanopt bug with tf2 * attempt #2 * attempt #3 * attempt 4 * docstring * correct pep8 violation introduced in merge conflicts resolution * attempt 5 * attempt 6 * just a random try * Revert "just a random try" This reverts commit 8223e768bfe33635549fb66cca2267514a60ebbf. * GPU tests for tensorflow * pep8 * attempt to solve issue with m2r2 * Remove transpose backend method * first draft of benchmarker (need to correct time measurement) * prettier bench table * Bitsize and prettier device methods * prettified table bench * Bug corrected (results were mixed up in the final table) * Better perf counter (for GPU support) * pep8 * EMD bench * solve bug if no GPU available * pep8 * warning about tensorflow numpy api being required in the backend.py docstring * Bug solve in backend docstring * not covering code which requires a GPU * Tensorflow gradients manipulation tested * Number of warmup runs is now customizable * typo * Remove some warnings while building docs * Change prettier_device to device_type in backend * Correct JAX mistakes preventing to see the CPU if a GPU is present * Attempt to solve JAX bug in case no GPU is found * Reworked benchmarks order and results storage & clear GPU after usage by benchmark * Add bench to backend docstring * better benchs * remove useless stuff * Better device_type * Now using MYST_PARSER and solving links issue in the README.md / online docs
2021-11-19[MRG] Solve bug of contribution link in docs + automated insert of readme in ↵Nathan Cassereau
doc (#301) * first try * bug solve * attempt to use m2r2 * More elegant dependency * readme.rst now generated automatically from readme.md * weird attempt * Revert "weird attempt" This reverts commit b45f0e6495148877ad3e93ad608b3b0cfe9bbb16. * fixing readme links * Revert "fixing readme links" This reverts commit 0c6ca7612ea297674a3afc50f8e6538c58c27701. * full link for readme * correct CONTRIBUTING guidelines mistakes
2021-06-08[MRG] Update example GAN to avoid the 10 minute CircleCI limit (#258)Rémi Flamary
* shortened example GAN * pep8 and typo * awesome animation * small eror pep8 * add animation to doc * better timing animation * tune step
2021-04-22[WIP] Build doc in master and stable separately and have both versions on ↵Rémi Flamary
the website (#243) * add bild doc action workflow * new build * build full doc * remove github action and update circleci builder * add versions in doc and change dev number
2020-04-24test new foldeerRémi Flamary
2020-04-24awesome mini galleryRémi Flamary
2020-04-24test autosummaryRémi Flamary
2020-04-24Better section name + snhix-gallery tuningRémi Flamary
2020-04-24test options sphinx galleryRémi Flamary
2020-04-24better documentationRémi Flamary
2020-04-24mockj module cupy for gpu focumentationRémi Flamary
2020-04-24add realeasesRémi Flamary
2020-04-24correct doc for emdRémi Flamary
2020-04-21[MRG] Actually run sphinx-gallery (#146)Rémi Flamary
* generate gallery * remove mock * add sklearn to requirermnt?txt for example * remove latex from fgw example * add networks for graph example * remove all * add requirement.txt rtd * rtd debug * update readme * eradthedoc with redirection * add conf rtd
2019-06-06update conf + readmeRémi Flamary
2018-09-28update documentationRémi Flamary
2018-05-30update notebooksRémi Flamary
2017-09-15add all files for docRémi Flamary
2017-09-15clean nico commit mess with its emalRémi Flamary
2017-09-10correction config.py for readthedocRémi Flamary
2017-09-01good notebook format generated by sphinx galleryRémi Flamary
2017-09-01update example with rst titlesRémi Flamary
2017-08-30wroking make!Rémi Flamary
2017-08-30bug config fileRémi Flamary
2017-08-30add script for building galleryRémi Flamary
2017-07-04add autograd mock againRémi Flamary
2017-07-04add autograd mockRémi Flamary
2017-07-04add autograd mockRémi Flamary
2017-07-03add mock in doc conf fileRémi Flamary
2017-07-03doc drRémi Flamary
2017-06-09update docRémi Flamary
2017-04-07correct docRémi Flamary
2017-04-07readthedoc testRémi Flamary
2017-04-07readthedoc mock trickRémi Flamary
2017-04-07readthedoc errorRémi Flamary
2017-04-07better dicumentationRémi Flamary
2016-12-02readthedoc 2Rémi Flamary
2016-12-02readthedocRémi Flamary
2016-12-02add doc for galleryRémi Flamary
2016-12-02working doc with galleryRémi Flamary
2016-12-02temporary readdthedoc correctionRémi Flamary
2016-12-02temporary disbly shinx-galleryRémi Flamary
2016-12-02first attempt to support sphinx-galleryAlexandre Gramfort
2016-11-08update doc 3Rémi Flamary