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2023-06-12[FEAT] Entropic gw/fgw/srgw/srfgw solvers (#455)upstream/latestCédric Vincent-Cuaz
* add entropic fgw + fgw bary + srgw + srfgw with tests * add exemples for entropic srgw - srfgw solvers * add PPA solvers for GW/FGW + complete previous commits * update readme * add tests * add examples + tests + warning in entropic solvers + releases * reduce testing runtimes for test_gromov * fix conflicts * optional marginals * improve coverage * gromov doc harmonization * fix pep8 * complete optional marginal for entropic srfgw --------- Co-authored-by: Rémi Flamary <remi.flamary@gmail.com>
2023-06-09[MRG] Update tests and documentation (#484)Rémi Flamary
* remove old macos and windows tets update requirements * speedup ssw and continuaous ot exmaples * speedup regpath and variane * speedup conv 2d example + continuous stick * speedup regpath
2023-05-03[DOC] Corrected spelling errors (#467)Oleksii Kachaiev
* Fix typos in docstrings and examples * A few more fixes * Fix ref for `center_ot_dual` function * Another typo * Fix titles formatting * Explicit empty line after math blocks * Typo: asymmetric * Fix code cell formatting for 1D barycenters * Empirical * Fix indentation for references * Fixed all WARNINGs about title formatting * Fix empty lines after math blocks * Fix whitespace line * Update changelog * Consistent Gromov-Wasserstein * More Gromov-Wasserstein consistency --------- Co-authored-by: Rémi Flamary <remi.flamary@gmail.com>
2023-05-02Perform zero_grad after each batch (#466)Oleksii Kachaiev
2023-04-25[FEAT] add the sparsity-constrained optimal transport funtionality and ↵Tianlin Liu
example (#459) * add sparsity-constrained ot funtionality and example * correct typos; add projection_sparse_simplex * add gradcheck; merge ot.sparse into ot.smooth. * reuse existing ot.smooth functions with a new 'sparsity_constrained' reg_type * address pep8 error * add backends for * update releases --------- Co-authored-by: Rémi Flamary <remi.flamary@gmail.com>
2023-04-24Typo in the title of OT_L1_vs_L2 (#462)Oleksii Kachaiev
2023-03-24[WIP] Build donc in GH Action and report warnings + move contributing and ↵Rémi Flamary
code of conduct in documentation (#441) * use action for doc with wraning visible * remove space * remove space again * test pre commands * install pot properly * install compiler... * try composite action * remoe warning in sliced exmaple * pep8 * move contributing and code of conduct * cleanup * underline too short * update quickstart * replace version selector by static list to avoid jsQuery bug
2023-03-22[MRG] CO-Optimal Transport solver (#447)Huy Tran
* Allow warmstart in sinkhorn and sinkhorn_log * Added argument for warmstart of dual vectors in Sinkhorn-based methods in * Add the number of the PR * [WIP] CO-Optimal Transport * Revert "[WIP] CO-Optimal Transport" This reverts commit f3d36b2705013409ac69b346585e311bc25fcfb7. * reformat with PEP8 * Fix W291 trailing whitespace error in pep8 test * Rearange position of warmstart argument and edit its description * Implementation of CO-Optimal Transport * Optimize code and edit documentation * fix backend bug in test cases * fix backend bug * fix backend bug * Add examples on COOT * Modify API and edit example * Edit API * minor edit of examples and release * fix bug in coot * fix doc examples * more fix of doc * restart CI * reordering ref * add more tests * add more tests * add test verbose * fix PEP8 bug * fix PEP8 bug * fix PEP8 bug * fix pytest bug * edit doc for better display --------- Co-authored-by: Rémi Flamary <remi.flamary@gmail.com> Co-authored-by: Alexandre Gramfort <agramfort@fb.com>
2023-03-10[WIP] Fix gromov examples gallery (#444)Cédric Vincent-Cuaz
* maj gw/ srgw/ generic cg solver * correct pep8 on current state * fix bug previous tests * fix pep8 * fix bug srGW constC in loss and gradient * fix doc html * fix doc html * start updating test_optim.py * update tests gromov and optim - plus fix gromov dependencies * add symmetry feature to entropic gw * add symmetry feature to entropic gw * add exemple for sr(F)GW matchings * small stuff * remove (reg,M) from line-search/ complete srgw tests with backend * remove backend repetitions / rename fG to costG/ fix innerlog to True * fix pep8 * take comments into account / new nx parameters still to test * factor (f)gw2 + test new backend parameters in ot.gromov + harmonize stopping criterions * split gromov.py in ot/gromov/ + update test_gromov with helper_backend functions * manual documentaion gromov * remove circular autosummary * trying stuff * debug documentation * alphabetic ordering of module * merge into branch * add note in entropic gw solvers * fix exemples/gromov doc * add fixed issue to releases.md --------- Co-authored-by: Rémi Flamary <remi.flamary@gmail.com>
2023-03-09[MRG] Semi-relaxed (fused) gromov-wasserstein divergence and improvements of ↵Cédric Vincent-Cuaz
gromov-wasserstein solvers (#431) * maj gw/ srgw/ generic cg solver * correct pep8 on current state * fix bug previous tests * fix pep8 * fix bug srGW constC in loss and gradient * fix doc html * fix doc html * start updating test_optim.py * update tests gromov and optim - plus fix gromov dependencies * add symmetry feature to entropic gw * add symmetry feature to entropic gw * add exemple for sr(F)GW matchings * small stuff * remove (reg,M) from line-search/ complete srgw tests with backend * remove backend repetitions / rename fG to costG/ fix innerlog to True * fix pep8 * take comments into account / new nx parameters still to test * factor (f)gw2 + test new backend parameters in ot.gromov + harmonize stopping criterions * split gromov.py in ot/gromov/ + update test_gromov with helper_backend functions * manual documentaion gromov * remove circular autosummary * trying stuff * debug documentation * alphabetic ordering of module * merge into branch * add note in entropic gw solvers --------- Co-authored-by: Rémi Flamary <remi.flamary@gmail.com>
2023-02-23[WIP] Wasserstein distance on the circle and Spherical Sliced-Wasserstein (#434)Clément Bonet
* W circle + SSW * Tests + Example SSW_1 * Example Wasserstein Circle + Tests * Wasserstein on the circle wrt Unif * Example SSW unif * pep8 * np.linalg.qr for numpy < 1.22 by batch + add python3.11 to tests * np qr * rm test python 3.11 * update names, tests, backend transpose * Comment error batchs * semidiscrete_wasserstein2_unif_circle example * torch permute method instead of torch.permute for previous versions * update comments and doc * doc wasserstein circle model as [0,1[ * Added ot.utils.get_coordinate_circle to get coordinates on the circle in turn
2023-01-16[MRG] OT for Gaussian distributions (#428)tgnassou
* add gaussian modules * add gaussian modules * add PR to release.md * Apply suggestions from code review Co-authored-by: Alexandre Gramfort <alexandre.gramfort@m4x.org> * Apply suggestions from code review Co-authored-by: Alexandre Gramfort <alexandre.gramfort@m4x.org> * Update ot/gaussian.py * Update ot/gaussian.py * add empirical bures wassertsein distance, fix docstring and test * update to fit with new networkx API * add test for jax et tf" * fix test * fix test? * add empirical_bures_wasserstein_mapping * fix docs * fix doc * fix docstring * add tgnassou to contributors * add more coverage for gaussian.py * add deprecated function * fix doc math" " * fix doc math" " * add remi flamary to authors of gaussiansmodule * fix equation Co-authored-by: Rémi Flamary <remi.flamary@gmail.com> Co-authored-by: Alexandre Gramfort <alexandre.gramfort@m4x.org>
2022-12-20[MRG] Gromov barycenter example bug (#425)Nathan Cassereau
* bug solve * releases.md
2022-09-27[MRG] Crash when computing weightless Hamming distance & Doc build (#402)Nathan Cassereau
* Bug solve * Releases.md updated * pep8 * attempt to solve docs building bug * releases.md
2022-08-01[MRG] Solve example throwing an error when executed on a GPU (#391)Nathan Cassereau
* Solve example throwing an error when executed on a GPU * add PR to releases.md * update pep8 command * pep8
2022-07-27[MRG] Free support Sinkhorn barycenters (#387)Eduardo Fernandes Montesuma
* Adding function for computing Sinkhorn Free Support barycenters * Adding exampel on Free Support Sinkhorn Barycenter * Fixing typo on free support sinkhorn barycenter example * Adding info on new Free Support Barycenter solver * Removing extra line so that code follows pep8 * Fixing issues with pep8 in example * Correcting issues with pep8 standards * Adding tests for free support sinkhorn barycenter * Adding section on Sinkhorn barycenter to the example * Changing distributions for the Sinkhorn barycenter example * Removing file that should not be on the last commit * Adding PR number to REALEASES.md * Adding new contributors * Update CONTRIBUTORS.md Co-authored-by: Rémi Flamary <remi.flamary@gmail.com>
2022-05-11[WIP] Graphical tweaks for GWB + fixed seed method for the partial gromov ↵eloitanguy
test (#376) * GWB first solver version * tests + example for gwb (untested) + free_bar doc fix * improved doc, fixed minor bugs, better example visu * minor doc + visu fixes * plot GWB pep8 fix * fixed partial gromov test reproductibility * added an animation for the GWB visu * added PR num * minor doc fixes + better gwb logo * GWB graphical tweaks + better seed method for partial gromov test * fixed PR number * refixed seed issue * seed fix fix fix Co-authored-by: Rémi Flamary <remi.flamary@gmail.com>
2022-05-06[WIP] Generalized Wasserstein Barycenters (#372)eloitanguy
* GWB first solver version * tests + example for gwb (untested) + free_bar doc fix * improved doc, fixed minor bugs, better example visu * minor doc + visu fixes * plot GWB pep8 fix * fixed partial gromov test reproductibility * added an animation for the GWB visu * added PR num * minor doc fixes + better gwb logo
2022-04-21[MRG] Release 8.2 (#365)Rémi Flamary
* release text and number * add examples in release fil build wheels * switch gallery to release * add much needed contributors file * debug circleci * une line of logos * working logo * back to stable sphinx galery
2022-04-11[MRG] MM algorithms for UOT (#362)Laetitia Chapel
* bugfix * update refs partial OT * fixes small typos in plot_partial_wass_and_gromov * fix small bugs in partial.py * update README * pep8 bugfix * modif doctest * fix bugtests * update on test_partial and test on the numerical precision on ot/partial * resolve merge pb * Delete partial.py * update unbalanced: mm algo+plot * update unbalanced: mm algo+plot * update unbalanced: mm algo+plot * update unbalanced: mm algo+plot * update unbalanced: mm algo+plot * add test mm algo unbalanced OT * add test mm algo unbalanced OT * add test mm algo unbalanced OT * add test mm algo unbalanced OT * add test mm algo unbalanced OT * add test mm algo unbalanced OT * add test mm algo unbalanced OT * add test mm algo unbalanced OT * update unbalanced: mm algo+plot * update unbalanced: mm algo+plot * update releases.md with new MM UOT algorithms Co-authored-by: Rémi Flamary <remi.flamary@gmail.com>
2022-04-05[MRG] Update examples in the doc (#359)Rémi Flamary
* add transparent color logo * add transparent color logo * move screenkhorn * move stochastic and install ffmpeg on circleci * try something * add sudo * install ffmpeg before python * cleanup examples * test svg scrapper * add animation for reg path * better example OT sivergence * update ttles and add plots * update free support * proper figure indexes * have less frame sin animation * update readme and release file * add tests for python 3.10
2022-04-04[WIP] Add backend dual loss and plan computation for stochastic optimization ↵Rémi Flamary
or regularized OT (#360) * add losses and plan computations and exmaple for dual oiptimization * pep8 * add nice exmaple * update awesome example stochasti dual * add all tests * pep8 + speedup exmaple * add release info
2022-03-24[MRG] Add factored coupling (#358)Rémi Flamary
* add gfactored ot * pep8 and add doc * add exmaple for factotred OT * final number of PR * correct test on backends * remove useless loss * better tests
2022-03-18[MRG] Add logo to POT (#357)Rémi Flamary
* add logo code and logo to doc * update release file
2022-03-09[MRG] minor spelling fix (#353)Keiland
2022-02-11[MRG] GW dictionary learning (#319)Cédric Vincent-Cuaz
* add fgw dictionary learning feature * add fgw dictionary learning feature * plot gromov wasserstein dictionary learning * Update __init__.py * fix pep8 errors exact E501 line too long * fix last pep8 issues * add unitary tests for (F)GW dictionary learning without using autodifferentiable functions * correct tests for (F)GW dictionary learning without using autodiff * correct tests for (F)GW dictionary learning without using autodiff * fix docs and notations * answer to review: improve tests, docs, examples + make node weights optional * fix pep8 and examples * improve docs + tests + thumbnail * make example faster * improve ex * update README.md * make GDL tests faster Co-authored-by: Rémi Flamary <remi.flamary@gmail.com>
2022-02-02[MRG] Add weak OT solver (#341)Rémi Flamary
* add info in release file * update tests * pep8 * add weak OT example * update plot in doc * correction ewample with empirical sinkhorn * better thumbnail * comment from review * update documenation
2022-01-17[MRG] Default pygment color for doc (#335)Rémi Flamary
* back to default pygment * add images back * move static images and make it work
2021-12-31minor changes for better doc generation in GW with Pytorch example (#330)Binh Nguyen
2021-11-16[WIP] Fix gradient scaling bug in emd (#310)Rémi Flamary
* orrect gradient bug in emd2 * small comment in test * deploy properly on tag release * subplot fail
2021-11-05[MRG] Release 0.8 (#289)Rémi Flamary
* working on release * test circleci * try again * cleanup circle ci run * add all PR and releant Issues * update doc * thanks idris * update version + add pyproject.toml * test pyproject.toml * revert tests * build wheels * use windows-latest for tests * add tests python 3.10 * build all whels * all versions * build all wheels * build all wheels * cleanup pep8 and minimal acions * forst shot text release * bettr text * stuff * release text updated * update manifest to allow build from source * update doc again * update release
2021-11-04[MRG] Make gromov loss differentiable wrt matrices and weights (#302)Rémi Flamary
* grmov differentable * new stuff * test gromov gradients * fgwdifferentiable * fgw tested * correc name test * add awesome example with gromov optimizatrion * pep8+ typos * damn pep8 * thunbnail * remove prints
2021-11-03[WIP] Add debiased barycenter (Sinkhorn + convolutional sinkhorn) (#291)Hicham Janati
* add debiased sinkhorn barycenter + make loops pythonic * add debiased arg in tests * add 1d and 2d examples of debiased barycenters * fix doctest * fix flake8 * pep8 + make func private + add convergence warnings * remove rel paths + add rng + pylab to pyplot * fix stopping criterion debiased * pass alex * change params with new API * add logdomain barycenters + separate debiased API * test new API * fix jax read-only ? * raise error for jax * test catch jax error * fix pytest catch error * fix relative path * fix flake8 * add warn arg everywhere * fix ref number * catch warnings in tests * add contrib to readme + change ref number * fix convolution example + gallery thumbnails * increase coverage * fix flake Co-authored-by: Hicham Janati <hicham.janati@inria.fr> Co-authored-by: Rémi Flamary <remi.flamary@gmail.com> Co-authored-by: Alexandre Gramfort <alexandre.gramfort@m4x.org>
2021-11-02[MRG] Sliced and 1D Wasserstein distances : backend versions (#256)Nicolas Courty
* add numpy and torch backends * stat sets on functions * proper import * install recent torch on windows * install recent torch on windows * now testing all functions in backedn * add jax backedn * clenaup windowds * proper convert for jax backedn * pep8 * try again windows tests * test jax conversion * try proper widows tests * emd fuction ses backedn * better test partial OT * proper tests to_numpy and teplate Backend * pep8 * pep8 x2 * feaking sinkhorn works with torch * sinkhorn2 compatible * working ot.emd2 * important detach * it should work * jax autodiff emd * pep8 * no tast same for jax * new independat tests per backedn * freaking pep8 * add tests for gradients * deprecate ot.gpu * worging dist function * working dist * dist done in backedn * not in * remove indexing * change accuacy for jax * first pull backend * projection simplex * projection simplex * projection simplex * projection simplex no ci * projection simplex no ci * projection simplex no ci * pep8 * add backedn discusion to quickstart guide * projection simplex no ci * projection simplex no ci * projection simplex no ci * pep8 + better doc * proper links * corect doctest * big debug documentation * doctest again * doctest again bis * doctest again ter (last one or i kill myself) * backend test + doc proj simplex * correction test_utils * correction test_utils * correction cumsum * correction flip * correction flip v2 * more debug * more debug * more debug + pep8 * pep8 * argh * proj_simplex * backedn works for sort * proj simplex * jax sucks * update doc * Update test/test_utils.py Co-authored-by: Alexandre Gramfort <alexandre.gramfort@m4x.org> * Update docs/source/quickstart.rst Co-authored-by: Alexandre Gramfort <alexandre.gramfort@m4x.org> * Update docs/source/quickstart.rst Co-authored-by: Alexandre Gramfort <alexandre.gramfort@m4x.org> * Update docs/source/quickstart.rst Co-authored-by: Alexandre Gramfort <alexandre.gramfort@m4x.org> * Update docs/source/readme.rst Co-authored-by: Alexandre Gramfort <alexandre.gramfort@m4x.org> * Update test/test_utils.py Co-authored-by: Alexandre Gramfort <alexandre.gramfort@m4x.org> * Update ot/utils.py Co-authored-by: Alexandre Gramfort <alexandre.gramfort@m4x.org> * Update docs/source/readme.rst Co-authored-by: Alexandre Gramfort <alexandre.gramfort@m4x.org> * Update ot/lp/__init__.py Co-authored-by: Alexandre Gramfort <alexandre.gramfort@m4x.org> * begin comment alex * comment alex part 2 * optimize test gromov * proj_simplex on vectors * add awesome gradient decsnt example on the weights * pep98 of course * proof read example by alex * pep8 again * encoding oos in translation * correct legend * new backend functions for sliced * small indent pb * Optimized backendversion of sliced W * error in sliced W * after master merge * error sliced * error sliced * pep8 * test_sliced pep8 * doctest + precision for sliced * doctest * type win test_backend gather * type win test_backend gather * Update sliced.py change argument of padding pad_width * Update backend.py update redefinition * Update backend.py pep8 * Update backend.py pep 8 again.... * pep8 * build docs * emd2_1D example * refectoring emd_1d and variants * remove unused previous wasserstein_1d * pep8 * upate example * move stuff * tesys should work + implemù random backend * test random generayor functions * correction * better random generation * update sliced * update sliced * proper tests sliced * max sliced * chae file nam * add stuff * example sliced flow and barycenter * correct typo + update readme * exemple sliced flow done * pep8 * solver1d works * pep8 Co-authored-by: Rémi Flamary <remi.flamary@gmail.com> Co-authored-by: Alexandre Gramfort <alexandre.gramfort@m4x.org>
2021-10-25[MRG] Regularization path for l2 UOT (#274)haoran010
* add reg path * debug examples and verify pep8 * pep8 and move the reg path examples in unbalanced folder Co-authored-by: haoran010 <haoran.wu@insa-rennes.fr> Co-authored-by: Rémi Flamary <remi.flamary@gmail.com>
2021-09-17[MRG] Implementation of two news algorithms: SaGroW and PoGroW. (#275)Tanguy
* Add two new algorithms to solve Gromov Wasserstein: Sampled Gromov Wasserstein and Pointwise Gromov Wasserstein. * Correct some lines in SaGroW and PoGroW to follow pep8 guide. * Change nb_samples name. Use rdm state. Change symmetric check. * Change names of len(p) and len(q) in SaGroW and PoGroW. * Re-add some deleted lines in the comments of gromov.py Co-authored-by: Rémi Flamary <remi.flamary@gmail.com>
2021-06-08[MRG] Update example GAN to avoid the 10 minute CircleCI limit (#258)Rémi Flamary
* shortened example GAN * pep8 and typo * awesome animation * small eror pep8 * add animation to doc * better timing animation * tune step
2021-06-02[WIP] Add Wasserstein GAN and debug memory leak (#254)Rémi Flamary
* add example and debug memory leak * print stuff * speedup gallery * Apply suggestions from code review Co-authored-by: Alexandre Gramfort <alexandre.gramfort@m4x.org> * test cells * proper header gan exmaple * cleanup sections * last changes ? Co-authored-by: Alexandre Gramfort <alexandre.gramfort@m4x.org>
2021-06-01[MRG] POT numpy/torch/jax backends (#249)Rémi Flamary
* add numpy and torch backends * stat sets on functions * proper import * install recent torch on windows * install recent torch on windows * now testing all functions in backedn * add jax backedn * clenaup windowds * proper convert for jax backedn * pep8 * try again windows tests * test jax conversion * try proper widows tests * emd fuction ses backedn * better test partial OT * proper tests to_numpy and teplate Backend * pep8 * pep8 x2 * feaking sinkhorn works with torch * sinkhorn2 compatible * working ot.emd2 * important detach * it should work * jax autodiff emd * pep8 * no tast same for jax * new independat tests per backedn * freaking pep8 * add tests for gradients * deprecate ot.gpu * worging dist function * working dist * dist done in backedn * not in * remove indexing * change accuacy for jax * first pull backend * projection simplex * projection simplex * projection simplex * projection simplex no ci * projection simplex no ci * projection simplex no ci * pep8 * add backedn discusion to quickstart guide * projection simplex no ci * projection simplex no ci * projection simplex no ci * pep8 + better doc * proper links * corect doctest * big debug documentation * doctest again * doctest again bis * doctest again ter (last one or i kill myself) * backend test + doc proj simplex * correction test_utils * correction test_utils * correction cumsum * correction flip * correction flip v2 * more debug * more debug * more debug + pep8 * pep8 * argh * proj_simplex * backedn works for sort * proj simplex * jax sucks * update doc * Update test/test_utils.py Co-authored-by: Alexandre Gramfort <alexandre.gramfort@m4x.org> * Update docs/source/quickstart.rst Co-authored-by: Alexandre Gramfort <alexandre.gramfort@m4x.org> * Update docs/source/quickstart.rst Co-authored-by: Alexandre Gramfort <alexandre.gramfort@m4x.org> * Update docs/source/quickstart.rst Co-authored-by: Alexandre Gramfort <alexandre.gramfort@m4x.org> * Update docs/source/readme.rst Co-authored-by: Alexandre Gramfort <alexandre.gramfort@m4x.org> * Update test/test_utils.py Co-authored-by: Alexandre Gramfort <alexandre.gramfort@m4x.org> * Update ot/utils.py Co-authored-by: Alexandre Gramfort <alexandre.gramfort@m4x.org> * Update docs/source/readme.rst Co-authored-by: Alexandre Gramfort <alexandre.gramfort@m4x.org> * Update ot/lp/__init__.py Co-authored-by: Alexandre Gramfort <alexandre.gramfort@m4x.org> * begin comment alex * comment alex part 2 * optimize test gromov * proj_simplex on vectors * add awesome gradient decsnt example on the weights * pep98 of course * proof read example by alex * pep8 again * encoding oos in translation * correct legend Co-authored-by: Nicolas Courty <ncourty@irisa.fr> Co-authored-by: Alexandre Gramfort <alexandre.gramfort@m4x.org>
2020-12-22[WIP] Update documentation "Why OT" section (#220)Rémi Flamary
* add some text + discussion sinkhorn * stating wrk on why POT * fix sphinx warnings + make html-noplot * discussion when not to use POT * add discussion which sinkhorn * edits on quickstart * more * remove warnings :any: * more * done * remove ref Co-authored-by: Alexandre Gramfort <alexandre.gramfort@m4x.org>
2020-10-22[MRG] Fix bugs for partial OT (#215)Laetitia Chapel
* bugfix * update refs partial OT * fixes small typos in plot_partial_wass_and_gromov * fix small bugs in partial.py * update README * pep8 bugfix * modif doctest * fix bugtests * update on test_partial and test on the numerical precision on ot/partial * resolve merge pb Co-authored-by: Rémi Flamary <remi.flamary@gmail.com>
2020-10-22[MRG] Sliced wasserstein (#203)AdrienCorenflos
* example for log treatment in bregman.py * Improve doc * Revert "example for log treatment in bregman.py" This reverts commit 9f51c14e * Add comments by Flamary * Delete repetitive description * Added raw string to avoid pbs with backslashes * Implements sliced wasserstein * Changed formatting of string for py3.5 support * Docstest, expected 0.0 and not 0. * Adressed comments by @rflamary * No 3d plot here * add sliced to the docs * Incorporate comments by @rflamary * add link to pdf Co-authored-by: Rémi Flamary <remi.flamary@gmail.com>
2020-08-24[WIP] add introductory example of OT, EMD and Sinkhorn (#191)aboisbunon
* add introductory example of OT, EMD and Sinkhorn * improve figure and try complying with pep8 * autopep8 * change markdown elements to rst * try solving issue with images * fix issue with images * add a section on varying the sinkhorn hyperparameter * add Sinkhorn algorithm and discussion for comparison between EMD and Sinkhorn * autopep8 again * add subsections and modify figure sizes/shapes * fix bug with print * correct some typos * remove computational time comparison * autopep8 again... Co-authored-by: Aurelie Boisbunon <abb@mydatamodels.com>
2020-05-13rename I to img in examples, since flake8 complains now (#176)D.J. Sutherland
2020-05-05really reproducipble WDA exampleRémi Flamary
2020-05-05cleanup WDA example with proper seedsRémi Flamary
2020-05-04[WIP] Improved docs and changed scipy version (#163)Romain Tavenard
* Improved docs and changed scipy version * Fixed dependency bug in setup.py * dependencies set to minimal versions for tests * add requirements file * added minimal version build for scipy (testing 1.2) * bugfix in minimal deps build * (yet another) bugfix in minimal deps build * minimal deps now reflect README.md * minimal deps: no autograd nor pymanopt * refactored workflow names * minimal deps: no doctests * minimal deps: numpy 1.16 * trigger GH Actions on PR * better merge * re-add minimal-deps... * bugfix in yaml * enforce np>=1.16 * enforce scipy and cython versions too * requires / install_requires * requires / install_requires / requires * setup_requires Co-authored-by: Rémi Flamary <remi.flamary@gmail.com>
2020-04-24vchange path in examplesRémi Flamary
2020-04-24relative path exmaplesRémi Flamary
2020-04-24exmaples in sectionsRémi Flamary
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