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entropic_partial_wasserstein work with backend (#449)
* add test of partial_wasserstein with torch tensors
* WIP: differentiable ot.partial.partial_wasserstein
* change test of torch partial
* make partial_wasserstein2 work with torch
* test backward through ot.partial.partial_wasserstein2
* add test of entropic_partial_wasserstein with torch tensors
* make entropic_partial_wasserstein work with torch tensors
* add test of backward through entropic_partial_wasserstein
* rm unused import
* test partial_wasserstein with all backends
* tests of partial fcts: check if torch is available
* partial: check if marginals are empty arrays
* add tests when marginals are empty arrays and/or m=None
* add PR to RELEASES.md
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Co-authored-by: Antoine Collas <22830806+antoinecollas@users.noreply.github.com>
Co-authored-by: Rémi Flamary <remi.flamary@gmail.com>
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* new API for OT solver
* use itertools for product of parameters
* add tests for result class
* add tests for result class
* add tests for result class last time?
* add sinkhorn
* make partial OT bckend compatible
* add TV as unbalanced flavor
* better tests
* make smoth backend compatible and add l2 tregularizatio to solve
* add reularizedd unbalanced
* add test for more complex attibutes
* add test for more complex attibutes
* add generic unbalaned solver and implement it for ot.solve
* add entropy to possible regularization
* star of documentation for ot.solv
* weird new pep8
* documenttaion for function ot.solve done
* pep8
* Update ot/solvers.py
Co-authored-by: Alexandre Gramfort <alexandre.gramfort@m4x.org>
* update release file
* Apply suggestions from code review
Co-authored-by: Alexandre Gramfort <alexandre.gramfort@m4x.org>
* add test NotImplemented
* pep8
* pep8gcmp pep8!
* compute kl in backend
* debug tensorflow kl backend
Co-authored-by: Alexandre Gramfort <alexandre.gramfort@m4x.org>
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test (#376)
* GWB first solver version
* tests + example for gwb (untested) + free_bar doc fix
* improved doc, fixed minor bugs, better example visu
* minor doc + visu fixes
* plot GWB pep8 fix
* fixed partial gromov test reproductibility
* added an animation for the GWB visu
* added PR num
* minor doc fixes + better gwb logo
* GWB graphical tweaks + better seed method for partial gromov test
* fixed PR number
* refixed seed issue
* seed fix fix fix
Co-authored-by: Rémi Flamary <remi.flamary@gmail.com>
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* GWB first solver version
* tests + example for gwb (untested) + free_bar doc fix
* improved doc, fixed minor bugs, better example visu
* minor doc + visu fixes
* plot GWB pep8 fix
* fixed partial gromov test reproductibility
* added an animation for the GWB visu
* added PR num
* minor doc fixes + better gwb logo
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* Bregman
* Resolve conflicts
* Bug solve
* Bregman updated for JAX compatibility
* Tests coherence between backend improved
* No longer enforcing 64 bits operations on Jax except for tests
* Now using mixtures, to make backend dependent tests with less code
* Better test skipping code
* Pep8 + test optimizations
* redundancy removed
* Docs
* Typo corrected
* Typo
* Typo
* Docs
* Docs
* pep8
* Backend docs
* Prettier docs
* Mistake corrected
* small changes
* Better wording
Co-authored-by: Rémi Flamary <remi.flamary@gmail.com>
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* add numpy and torch backends
* stat sets on functions
* proper import
* install recent torch on windows
* install recent torch on windows
* now testing all functions in backedn
* add jax backedn
* clenaup windowds
* proper convert for jax backedn
* pep8
* try again windows tests
* test jax conversion
* try proper widows tests
* emd fuction ses backedn
* better test partial OT
* proper tests to_numpy and teplate Backend
* pep8
* pep8 x2
* feaking sinkhorn works with torch
* sinkhorn2 compatible
* working ot.emd2
* important detach
* it should work
* jax autodiff emd
* pep8
* no tast same for jax
* new independat tests per backedn
* freaking pep8
* add tests for gradients
* deprecate ot.gpu
* worging dist function
* working dist
* dist done in backedn
* not in
* remove indexing
* change accuacy for jax
* first pull backend
* projection simplex
* projection simplex
* projection simplex
* projection simplex no ci
* projection simplex no ci
* projection simplex no ci
* pep8
* add backedn discusion to quickstart guide
* projection simplex no ci
* projection simplex no ci
* projection simplex no ci
* pep8 + better doc
* proper links
* corect doctest
* big debug documentation
* doctest again
* doctest again bis
* doctest again ter (last one or i kill myself)
* backend test + doc proj simplex
* correction test_utils
* correction test_utils
* correction cumsum
* correction flip
* correction flip v2
* more debug
* more debug
* more debug + pep8
* pep8
* argh
* proj_simplex
* backedn works for sort
* proj simplex
* jax sucks
* update doc
* Update test/test_utils.py
Co-authored-by: Alexandre Gramfort <alexandre.gramfort@m4x.org>
* Update docs/source/quickstart.rst
Co-authored-by: Alexandre Gramfort <alexandre.gramfort@m4x.org>
* Update docs/source/quickstart.rst
Co-authored-by: Alexandre Gramfort <alexandre.gramfort@m4x.org>
* Update docs/source/quickstart.rst
Co-authored-by: Alexandre Gramfort <alexandre.gramfort@m4x.org>
* Update docs/source/readme.rst
Co-authored-by: Alexandre Gramfort <alexandre.gramfort@m4x.org>
* Update test/test_utils.py
Co-authored-by: Alexandre Gramfort <alexandre.gramfort@m4x.org>
* Update ot/utils.py
Co-authored-by: Alexandre Gramfort <alexandre.gramfort@m4x.org>
* Update docs/source/readme.rst
Co-authored-by: Alexandre Gramfort <alexandre.gramfort@m4x.org>
* Update ot/lp/__init__.py
Co-authored-by: Alexandre Gramfort <alexandre.gramfort@m4x.org>
* begin comment alex
* comment alex part 2
* optimize test gromov
* proj_simplex on vectors
* add awesome gradient decsnt example on the weights
* pep98 of course
* proof read example by alex
* pep8 again
* encoding oos in translation
* correct legend
Co-authored-by: Nicolas Courty <ncourty@irisa.fr>
Co-authored-by: Alexandre Gramfort <alexandre.gramfort@m4x.org>
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* bugfix
* update refs partial OT
* fixes small typos in plot_partial_wass_and_gromov
* fix small bugs in partial.py
* update README
* pep8 bugfix
* modif doctest
* fix bugtests
* update on test_partial and test on the numerical precision on ot/partial
* resolve merge pb
Co-authored-by: Rémi Flamary <remi.flamary@gmail.com>
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