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* new API for OT solver
* use itertools for product of parameters
* add tests for result class
* add tests for result class
* add tests for result class last time?
* add sinkhorn
* make partial OT bckend compatible
* add TV as unbalanced flavor
* better tests
* make smoth backend compatible and add l2 tregularizatio to solve
* add reularizedd unbalanced
* add test for more complex attibutes
* add test for more complex attibutes
* add generic unbalaned solver and implement it for ot.solve
* add entropy to possible regularization
* star of documentation for ot.solv
* weird new pep8
* documenttaion for function ot.solve done
* pep8
* Update ot/solvers.py
Co-authored-by: Alexandre Gramfort <alexandre.gramfort@m4x.org>
* update release file
* Apply suggestions from code review
Co-authored-by: Alexandre Gramfort <alexandre.gramfort@m4x.org>
* add test NotImplemented
* pep8
* pep8gcmp pep8!
* compute kl in backend
* debug tensorflow kl backend
Co-authored-by: Alexandre Gramfort <alexandre.gramfort@m4x.org>
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* Correct test_mm_convergence for cupy
* Fix bug where number of iterations is limited to 2^31
* Update RELEASES.md
* Replace size_t with long long
* Use uint64_t instead of long long
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* bugfix
* update refs partial OT
* fixes small typos in plot_partial_wass_and_gromov
* fix small bugs in partial.py
* update README
* pep8 bugfix
* modif doctest
* fix bugtests
* update on test_partial and test on the numerical precision on ot/partial
* resolve merge pb
* Delete partial.py
* update unbalanced: mm algo+plot
* update unbalanced: mm algo+plot
* update unbalanced: mm algo+plot
* update unbalanced: mm algo+plot
* update unbalanced: mm algo+plot
* add test mm algo unbalanced OT
* add test mm algo unbalanced OT
* add test mm algo unbalanced OT
* add test mm algo unbalanced OT
* add test mm algo unbalanced OT
* add test mm algo unbalanced OT
* add test mm algo unbalanced OT
* add test mm algo unbalanced OT
* update unbalanced: mm algo+plot
* update unbalanced: mm algo+plot
* update releases.md with new MM UOT algorithms
Co-authored-by: Rémi Flamary <remi.flamary@gmail.com>
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* First draft
* Add matrix inverse and square root to backend
* Eigen decomposition for older versions of pytorch (1.8.1 and older)
* Corrected eigen decomposition for pytorch 1.8.1 and older
* Spectral theorem is a thing
* Optimization
* small optimization
* More functions converted
* pep8
* remove a warning and prepare torch meshgrid for future torch release (which will change default indexing)
* dots and pep8
* Meshgrid corrected for older version and prepared for future versions changes
* New backend functions
* Base transport
* LinearTransport
* All transport classes + pep8
* PR added to release file
* Jcpot barycenter test
* unbalanced with backend
* pep8
* bug solve
* test of domain adaptation with backends
* solve bug for tic toc & macos
* solving scipy deprecation warning
* solving scipy deprecation warning attempt2
* solving scipy deprecation warning attempt3
* A warning is triggered when a float->int conversion is detected
* bug solve
* docs
* release file updated
* Better handling of float->int conversion in EMD
* Corrected test for is_floating_point
* docs
* release file updated
* cupy does not allow implicit cast
* fromnumpy
* added test
* test da tf jax
* test unbalanced with no provided histogram
* using type_as argument in unif function correctly
* pep8
* transport plan cast in emd changed behaviour, now trying to cast as histogram's dtype, defaulting to cost matrix
Co-authored-by: Rémi Flamary <remi.flamary@gmail.com>
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* speedup tests
* add color to tests and timings
* add test unbalanced
* stupid missing -
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add unbalanced with stabilization
add unbalanced tests with stabilization
fix doctest examples
add xvfb in travis
remove explicit call xvfb in travis
change alpha to reg_m
minor flake8
remove redundant sink definitions + better doc and naming
add stabilized unbalanced barycenter + add not converged warnings
add test for stable barycenter
add generic barycenter func + make method funcs private
fix typo + add method test for barycenters
fix doc examples + add xml to gitignore
fix whitespace in example
change logsumexp import - scipy deprecation warning
fix doctest
improve naming + add stable barycenter in bregman
add test for stable bar + test the method arg in bregman
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