From a303cc6b483d3cd958c399621e22e40574bcbbc8 Mon Sep 17 00:00:00 2001
From: Rémi Flamary <remi.flamary@gmail.com>
Date: Tue, 21 Apr 2020 17:48:37 +0200
Subject: [MRG] Actually run sphinx-gallery (#146)

* generate gallery

* remove mock

* add sklearn to requirermnt?txt for example

* remove latex from fgw example

* add networks for graph example

* remove all

* add requirement.txt rtd

* rtd debug

* update readme

* eradthedoc with redirection

* add conf rtd
---
 docs/source/auto_examples/index.rst | 620 ------------------------------------
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diff --git a/docs/source/auto_examples/index.rst b/docs/source/auto_examples/index.rst
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@@ -1,620 +0,0 @@
-:orphan:
-
-
-
-.. _sphx_glr_auto_examples:
-
-POT Examples
-============
-
-This is a gallery of all the POT example files.
-
-
-
-.. raw:: html
-
-    <div class="sphx-glr-thumbcontainer" tooltip="This example illustrates the computation of EMD and Sinkhorn transport plans and their visualiz...">
-
-.. only:: html
-
- .. figure:: /auto_examples/images/thumb/sphx_glr_plot_OT_1D_thumb.png
-
-     :ref:`sphx_glr_auto_examples_plot_OT_1D.py`
-
-.. raw:: html
-
-    </div>
-
-
-.. toctree::
-   :hidden:
-
-   /auto_examples/plot_OT_1D
-
-.. raw:: html
-
-    <div class="sphx-glr-thumbcontainer" tooltip="This example illustrates the computation of Unbalanced Optimal transport using a Kullback-Leibl...">
-
-.. only:: html
-
- .. figure:: /auto_examples/images/thumb/sphx_glr_plot_UOT_1D_thumb.png
-
-     :ref:`sphx_glr_auto_examples_plot_UOT_1D.py`
-
-.. raw:: html
-
-    </div>
-
-
-.. toctree::
-   :hidden:
-
-   /auto_examples/plot_UOT_1D
-
-.. raw:: html
-
-    <div class="sphx-glr-thumbcontainer" tooltip="This example illustrates the computation of Screenkhorn: Screening Sinkhorn Algorithm for Optim...">
-
-.. only:: html
-
- .. figure:: /auto_examples/images/thumb/sphx_glr_plot_screenkhorn_1D_thumb.png
-
-     :ref:`sphx_glr_auto_examples_plot_screenkhorn_1D.py`
-
-.. raw:: html
-
-    </div>
-
-
-.. toctree::
-   :hidden:
-
-   /auto_examples/plot_screenkhorn_1D
-
-.. raw:: html
-
-    <div class="sphx-glr-thumbcontainer" tooltip="Illustrates the use of the generic solver for regularized OT with user-designed regularization ...">
-
-.. only:: html
-
- .. figure:: /auto_examples/images/thumb/sphx_glr_plot_optim_OTreg_thumb.png
-
-     :ref:`sphx_glr_auto_examples_plot_optim_OTreg.py`
-
-.. raw:: html
-
-    </div>
-
-
-.. toctree::
-   :hidden:
-
-   /auto_examples/plot_optim_OTreg
-
-.. raw:: html
-
-    <div class="sphx-glr-thumbcontainer" tooltip="This example illustrates the computation of EMD, Sinkhorn and smooth OT plans and their visuali...">
-
-.. only:: html
-
- .. figure:: /auto_examples/images/thumb/sphx_glr_plot_OT_1D_smooth_thumb.png
-
-     :ref:`sphx_glr_auto_examples_plot_OT_1D_smooth.py`
-
-.. raw:: html
-
-    </div>
-
-
-.. toctree::
-   :hidden:
-
-   /auto_examples/plot_OT_1D_smooth
-
-.. raw:: html
-
-    <div class="sphx-glr-thumbcontainer" tooltip="Illustration of 2D Wasserstein barycenters if discributions that are weighted sum of diracs.">
-
-.. only:: html
-
- .. figure:: /auto_examples/images/thumb/sphx_glr_plot_free_support_barycenter_thumb.png
-
-     :ref:`sphx_glr_auto_examples_plot_free_support_barycenter.py`
-
-.. raw:: html
-
-    </div>
-
-
-.. toctree::
-   :hidden:
-
-   /auto_examples/plot_free_support_barycenter
-
-.. raw:: html
-
-    <div class="sphx-glr-thumbcontainer" tooltip="Shows how to compute multiple EMD and Sinkhorn with two differnt ground metrics and plot their ...">
-
-.. only:: html
-
- .. figure:: /auto_examples/images/thumb/sphx_glr_plot_compute_emd_thumb.png
-
-     :ref:`sphx_glr_auto_examples_plot_compute_emd.py`
-
-.. raw:: html
-
-    </div>
-
-
-.. toctree::
-   :hidden:
-
-   /auto_examples/plot_compute_emd
-
-.. raw:: html
-
-    <div class="sphx-glr-thumbcontainer" tooltip="This example is designed to show how to use the Gromov-Wassertsein distance computation in POT....">
-
-.. only:: html
-
- .. figure:: /auto_examples/images/thumb/sphx_glr_plot_gromov_thumb.png
-
-     :ref:`sphx_glr_auto_examples_plot_gromov.py`
-
-.. raw:: html
-
-    </div>
-
-
-.. toctree::
-   :hidden:
-
-   /auto_examples/plot_gromov
-
-.. raw:: html
-
-    <div class="sphx-glr-thumbcontainer" tooltip="This example is designed to illustrate how the Convolutional Wasserstein Barycenter function of...">
-
-.. only:: html
-
- .. figure:: /auto_examples/images/thumb/sphx_glr_plot_convolutional_barycenter_thumb.png
-
-     :ref:`sphx_glr_auto_examples_plot_convolutional_barycenter.py`
-
-.. raw:: html
-
-    </div>
-
-
-.. toctree::
-   :hidden:
-
-   /auto_examples/plot_convolutional_barycenter
-
-.. raw:: html
-
-    <div class="sphx-glr-thumbcontainer" tooltip=" ">
-
-.. only:: html
-
- .. figure:: /auto_examples/images/thumb/sphx_glr_plot_otda_linear_mapping_thumb.png
-
-     :ref:`sphx_glr_auto_examples_plot_otda_linear_mapping.py`
-
-.. raw:: html
-
-    </div>
-
-
-.. toctree::
-   :hidden:
-
-   /auto_examples/plot_otda_linear_mapping
-
-.. raw:: html
-
-    <div class="sphx-glr-thumbcontainer" tooltip="Illustration of 2D optimal transport between discributions that are weighted sum of diracs. The...">
-
-.. only:: html
-
- .. figure:: /auto_examples/images/thumb/sphx_glr_plot_OT_2D_samples_thumb.png
-
-     :ref:`sphx_glr_auto_examples_plot_OT_2D_samples.py`
-
-.. raw:: html
-
-    </div>
-
-
-.. toctree::
-   :hidden:
-
-   /auto_examples/plot_OT_2D_samples
-
-.. raw:: html
-
-    <div class="sphx-glr-thumbcontainer" tooltip="This example illustrate the use of WDA as proposed in [11].">
-
-.. only:: html
-
- .. figure:: /auto_examples/images/thumb/sphx_glr_plot_WDA_thumb.png
-
-     :ref:`sphx_glr_auto_examples_plot_WDA.py`
-
-.. raw:: html
-
-    </div>
-
-
-.. toctree::
-   :hidden:
-
-   /auto_examples/plot_WDA
-
-.. raw:: html
-
-    <div class="sphx-glr-thumbcontainer" tooltip="This example is designed to show how to use the stochatic optimization algorithms for descrete ...">
-
-.. only:: html
-
- .. figure:: /auto_examples/images/thumb/sphx_glr_plot_stochastic_thumb.png
-
-     :ref:`sphx_glr_auto_examples_plot_stochastic.py`
-
-.. raw:: html
-
-    </div>
-
-
-.. toctree::
-   :hidden:
-
-   /auto_examples/plot_stochastic
-
-.. raw:: html
-
-    <div class="sphx-glr-thumbcontainer" tooltip="This example presents a way of transferring colors between two images with Optimal Transport as...">
-
-.. only:: html
-
- .. figure:: /auto_examples/images/thumb/sphx_glr_plot_otda_color_images_thumb.png
-
-     :ref:`sphx_glr_auto_examples_plot_otda_color_images.py`
-
-.. raw:: html
-
-    </div>
-
-
-.. toctree::
-   :hidden:
-
-   /auto_examples/plot_otda_color_images
-
-.. raw:: html
-
-    <div class="sphx-glr-thumbcontainer" tooltip="This example illustrates the computation of regularized Wassersyein Barycenter as proposed in [...">
-
-.. only:: html
-
- .. figure:: /auto_examples/images/thumb/sphx_glr_plot_barycenter_1D_thumb.png
-
-     :ref:`sphx_glr_auto_examples_plot_barycenter_1D.py`
-
-.. raw:: html
-
-    </div>
-
-
-.. toctree::
-   :hidden:
-
-   /auto_examples/plot_barycenter_1D
-
-.. raw:: html
-
-    <div class="sphx-glr-thumbcontainer" tooltip="This example introduces a domain adaptation in a 2D setting and OTDA approach with Laplacian re...">
-
-.. only:: html
-
- .. figure:: /auto_examples/images/thumb/sphx_glr_plot_otda_laplacian_thumb.png
-
-     :ref:`sphx_glr_auto_examples_plot_otda_laplacian.py`
-
-.. raw:: html
-
-    </div>
-
-
-.. toctree::
-   :hidden:
-
-   /auto_examples/plot_otda_laplacian
-
-.. raw:: html
-
-    <div class="sphx-glr-thumbcontainer" tooltip="OT for domain adaptation with image color adaptation [6] with mapping estimation [8].">
-
-.. only:: html
-
- .. figure:: /auto_examples/images/thumb/sphx_glr_plot_otda_mapping_colors_images_thumb.png
-
-     :ref:`sphx_glr_auto_examples_plot_otda_mapping_colors_images.py`
-
-.. raw:: html
-
-    </div>
-
-
-.. toctree::
-   :hidden:
-
-   /auto_examples/plot_otda_mapping_colors_images
-
-.. raw:: html
-
-    <div class="sphx-glr-thumbcontainer" tooltip="This example illustrates the computation of regularized Wassersyein Barycenter as proposed in [...">
-
-.. only:: html
-
- .. figure:: /auto_examples/images/thumb/sphx_glr_plot_UOT_barycenter_1D_thumb.png
-
-     :ref:`sphx_glr_auto_examples_plot_UOT_barycenter_1D.py`
-
-.. raw:: html
-
-    </div>
-
-
-.. toctree::
-   :hidden:
-
-   /auto_examples/plot_UOT_barycenter_1D
-
-.. raw:: html
-
-    <div class="sphx-glr-thumbcontainer" tooltip="This example presents how to use MappingTransport to estimate at the same time both the couplin...">
-
-.. only:: html
-
- .. figure:: /auto_examples/images/thumb/sphx_glr_plot_otda_mapping_thumb.png
-
-     :ref:`sphx_glr_auto_examples_plot_otda_mapping.py`
-
-.. raw:: html
-
-    </div>
-
-
-.. toctree::
-   :hidden:
-
-   /auto_examples/plot_otda_mapping
-
-.. raw:: html
-
-    <div class="sphx-glr-thumbcontainer" tooltip="This example illustrates the computation of FGW for 1D measures[18].">
-
-.. only:: html
-
- .. figure:: /auto_examples/images/thumb/sphx_glr_plot_fgw_thumb.png
-
-     :ref:`sphx_glr_auto_examples_plot_fgw.py`
-
-.. raw:: html
-
-    </div>
-
-
-.. toctree::
-   :hidden:
-
-   /auto_examples/plot_fgw
-
-.. raw:: html
-
-    <div class="sphx-glr-thumbcontainer" tooltip="This example introduces a semi supervised domain adaptation in a 2D setting. It explicits the p...">
-
-.. only:: html
-
- .. figure:: /auto_examples/images/thumb/sphx_glr_plot_otda_semi_supervised_thumb.png
-
-     :ref:`sphx_glr_auto_examples_plot_otda_semi_supervised.py`
-
-.. raw:: html
-
-    </div>
-
-
-.. toctree::
-   :hidden:
-
-   /auto_examples/plot_otda_semi_supervised
-
-.. raw:: html
-
-    <div class="sphx-glr-thumbcontainer" tooltip="This example introduces a domain adaptation in a 2D setting and the 4 OTDA approaches currently...">
-
-.. only:: html
-
- .. figure:: /auto_examples/images/thumb/sphx_glr_plot_otda_classes_thumb.png
-
-     :ref:`sphx_glr_auto_examples_plot_otda_classes.py`
-
-.. raw:: html
-
-    </div>
-
-
-.. toctree::
-   :hidden:
-
-   /auto_examples/plot_otda_classes
-
-.. raw:: html
-
-    <div class="sphx-glr-thumbcontainer" tooltip="This example is designed to show how to use the Partial (Gromov-)Wassertsein distance computati...">
-
-.. only:: html
-
- .. figure:: /auto_examples/images/thumb/sphx_glr_plot_partial_wass_and_gromov_thumb.png
-
-     :ref:`sphx_glr_auto_examples_plot_partial_wass_and_gromov.py`
-
-.. raw:: html
-
-    </div>
-
-
-.. toctree::
-   :hidden:
-
-   /auto_examples/plot_partial_wass_and_gromov
-
-.. raw:: html
-
-    <div class="sphx-glr-thumbcontainer" tooltip="This example introduces a domain adaptation in a 2D setting. It explicits the problem of domain...">
-
-.. only:: html
-
- .. figure:: /auto_examples/images/thumb/sphx_glr_plot_otda_d2_thumb.png
-
-     :ref:`sphx_glr_auto_examples_plot_otda_d2.py`
-
-.. raw:: html
-
-    </div>
-
-
-.. toctree::
-   :hidden:
-
-   /auto_examples/plot_otda_d2
-
-.. raw:: html
-
-    <div class="sphx-glr-thumbcontainer" tooltip="2D OT on empirical distributio  with different gound metric.">
-
-.. only:: html
-
- .. figure:: /auto_examples/images/thumb/sphx_glr_plot_OT_L1_vs_L2_thumb.png
-
-     :ref:`sphx_glr_auto_examples_plot_OT_L1_vs_L2.py`
-
-.. raw:: html
-
-    </div>
-
-
-.. toctree::
-   :hidden:
-
-   /auto_examples/plot_OT_L1_vs_L2
-
-.. raw:: html
-
-    <div class="sphx-glr-thumbcontainer" tooltip="This example introduces a target shift problem with two 2D source and 1 target domain.">
-
-.. only:: html
-
- .. figure:: /auto_examples/images/thumb/sphx_glr_plot_otda_jcpot_thumb.png
-
-     :ref:`sphx_glr_auto_examples_plot_otda_jcpot.py`
-
-.. raw:: html
-
-    </div>
-
-
-.. toctree::
-   :hidden:
-
-   /auto_examples/plot_otda_jcpot
-
-.. raw:: html
-
-    <div class="sphx-glr-thumbcontainer" tooltip="This example illustrates the computation of regularized Wasserstein Barycenter as proposed in [...">
-
-.. only:: html
-
- .. figure:: /auto_examples/images/thumb/sphx_glr_plot_barycenter_lp_vs_entropic_thumb.png
-
-     :ref:`sphx_glr_auto_examples_plot_barycenter_lp_vs_entropic.py`
-
-.. raw:: html
-
-    </div>
-
-
-.. toctree::
-   :hidden:
-
-   /auto_examples/plot_barycenter_lp_vs_entropic
-
-.. raw:: html
-
-    <div class="sphx-glr-thumbcontainer" tooltip="This example illustrates the computation barycenter of labeled graphs using FGW">
-
-.. only:: html
-
- .. figure:: /auto_examples/images/thumb/sphx_glr_plot_barycenter_fgw_thumb.png
-
-     :ref:`sphx_glr_auto_examples_plot_barycenter_fgw.py`
-
-.. raw:: html
-
-    </div>
-
-
-.. toctree::
-   :hidden:
-
-   /auto_examples/plot_barycenter_fgw
-
-.. raw:: html
-
-    <div class="sphx-glr-thumbcontainer" tooltip="This example is designed to show how to use the Gromov-Wasserstein distance computation in POT....">
-
-.. only:: html
-
- .. figure:: /auto_examples/images/thumb/sphx_glr_plot_gromov_barycenter_thumb.png
-
-     :ref:`sphx_glr_auto_examples_plot_gromov_barycenter.py`
-
-.. raw:: html
-
-    </div>
-
-
-.. toctree::
-   :hidden:
-
-   /auto_examples/plot_gromov_barycenter
-.. raw:: html
-
-    <div class="sphx-glr-clear"></div>
-
-
-
-.. only :: html
-
- .. container:: sphx-glr-footer
-    :class: sphx-glr-footer-gallery
-
-
-  .. container:: sphx-glr-download sphx-glr-download-python
-
-    :download:`Download all examples in Python source code: auto_examples_python.zip <//home/rflamary/PYTHON/POT/docs/source/auto_examples/auto_examples_python.zip>`
-
-
-
-  .. container:: sphx-glr-download sphx-glr-download-jupyter
-
-    :download:`Download all examples in Jupyter notebooks: auto_examples_jupyter.zip <//home/rflamary/PYTHON/POT/docs/source/auto_examples/auto_examples_jupyter.zip>`
-
-
-.. only:: html
-
- .. rst-class:: sphx-glr-signature
-
-    `Gallery generated by Sphinx-Gallery <https://sphinx-gallery.github.io>`_
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