From f12153c0c1be6f6377ace0050201409ec1b7e829 Mon Sep 17 00:00:00 2001
From: Rémi Flamary <remi.flamary@gmail.com>
Date: Wed, 29 Aug 2018 14:10:04 +0200
Subject: update documentation examples

---
 .../plot_free_support_barycenter.ipynb             | 108 +++++++++++++++++++++
 1 file changed, 108 insertions(+)
 create mode 100644 docs/source/auto_examples/plot_free_support_barycenter.ipynb

(limited to 'docs/source/auto_examples/plot_free_support_barycenter.ipynb')

diff --git a/docs/source/auto_examples/plot_free_support_barycenter.ipynb b/docs/source/auto_examples/plot_free_support_barycenter.ipynb
new file mode 100644
index 0000000..05a81c8
--- /dev/null
+++ b/docs/source/auto_examples/plot_free_support_barycenter.ipynb
@@ -0,0 +1,108 @@
+{
+  "cells": [
+    {
+      "cell_type": "code",
+      "execution_count": null,
+      "metadata": {
+        "collapsed": false
+      },
+      "outputs": [],
+      "source": [
+        "%matplotlib inline"
+      ]
+    },
+    {
+      "cell_type": "markdown",
+      "metadata": {},
+      "source": [
+        "\n# 2D free support Wasserstein barycenters of distributions\n\n\nIllustration of 2D Wasserstein barycenters if discributions that are weighted\nsum of diracs.\n\n\n"
+      ]
+    },
+    {
+      "cell_type": "code",
+      "execution_count": null,
+      "metadata": {
+        "collapsed": false
+      },
+      "outputs": [],
+      "source": [
+        "# Author: Vivien Seguy <vivien.seguy@iip.ist.i.kyoto-u.ac.jp>\n#\n# License: MIT License\n\nimport numpy as np\nimport matplotlib.pylab as pl\nimport ot"
+      ]
+    },
+    {
+      "cell_type": "markdown",
+      "metadata": {},
+      "source": [
+        "Generate data\n -------------\n%% parameters and data generation\n\n"
+      ]
+    },
+    {
+      "cell_type": "code",
+      "execution_count": null,
+      "metadata": {
+        "collapsed": false
+      },
+      "outputs": [],
+      "source": [
+        "N = 3\nd = 2\nmeasures_locations = []\nmeasures_weights = []\n\nfor i in range(N):\n\n    n_i = np.random.randint(low=1, high=20)  # nb samples\n\n    mu_i = np.random.normal(0., 4., (d,))  # Gaussian mean\n\n    A_i = np.random.rand(d, d)\n    cov_i = np.dot(A_i, A_i.transpose())  # Gaussian covariance matrix\n\n    x_i = ot.datasets.make_2D_samples_gauss(n_i, mu_i, cov_i)  # Dirac locations\n    b_i = np.random.uniform(0., 1., (n_i,))\n    b_i = b_i / np.sum(b_i)  # Dirac weights\n\n    measures_locations.append(x_i)\n    measures_weights.append(b_i)"
+      ]
+    },
+    {
+      "cell_type": "markdown",
+      "metadata": {},
+      "source": [
+        "Compute free support barycenter\n-------------\n\n"
+      ]
+    },
+    {
+      "cell_type": "code",
+      "execution_count": null,
+      "metadata": {
+        "collapsed": false
+      },
+      "outputs": [],
+      "source": [
+        "k = 10  # number of Diracs of the barycenter\nX_init = np.random.normal(0., 1., (k, d))  # initial Dirac locations\nb = np.ones((k,)) / k  # weights of the barycenter (it will not be optimized, only the locations are optimized)\n\nX = ot.lp.free_support_barycenter(measures_locations, measures_weights, X_init, b)"
+      ]
+    },
+    {
+      "cell_type": "markdown",
+      "metadata": {},
+      "source": [
+        "Plot data\n---------\n\n"
+      ]
+    },
+    {
+      "cell_type": "code",
+      "execution_count": null,
+      "metadata": {
+        "collapsed": false
+      },
+      "outputs": [],
+      "source": [
+        "pl.figure(1)\nfor (x_i, b_i) in zip(measures_locations, measures_weights):\n    color = np.random.randint(low=1, high=10 * N)\n    pl.scatter(x_i[:, 0], x_i[:, 1], s=b * 1000, label='input measure')\npl.scatter(X[:, 0], X[:, 1], s=b * 1000, c='black', marker='^', label='2-Wasserstein barycenter')\npl.title('Data measures and their barycenter')\npl.legend(loc=0)\npl.show()"
+      ]
+    }
+  ],
+  "metadata": {
+    "kernelspec": {
+      "display_name": "Python 3",
+      "language": "python",
+      "name": "python3"
+    },
+    "language_info": {
+      "codemirror_mode": {
+        "name": "ipython",
+        "version": 3
+      },
+      "file_extension": ".py",
+      "mimetype": "text/x-python",
+      "name": "python",
+      "nbconvert_exporter": "python",
+      "pygments_lexer": "ipython3",
+      "version": "3.6.5"
+    }
+  },
+  "nbformat": 4,
+  "nbformat_minor": 0
+}
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