From a54775103541ea37f54269de1ba1e1396a6d7b30 Mon Sep 17 00:00:00 2001 From: Rémi Flamary Date: Fri, 24 Apr 2020 17:32:57 +0200 Subject: exmaples in sections --- examples/plot_otda_d2.py | 174 ----------------------------------------------- 1 file changed, 174 deletions(-) delete mode 100644 examples/plot_otda_d2.py (limited to 'examples/plot_otda_d2.py') diff --git a/examples/plot_otda_d2.py b/examples/plot_otda_d2.py deleted file mode 100644 index f49a570..0000000 --- a/examples/plot_otda_d2.py +++ /dev/null @@ -1,174 +0,0 @@ -# -*- coding: utf-8 -*- -""" -=================================================== -OT for domain adaptation on empirical distributions -=================================================== - -This example introduces a domain adaptation in a 2D setting. It explicits -the problem of domain adaptation and introduces some optimal transport -approaches to solve it. - -Quantities such as optimal couplings, greater coupling coefficients and -transported samples are represented in order to give a visual understanding -of what the transport methods are doing. -""" - -# Authors: Remi Flamary -# Stanislas Chambon -# -# License: MIT License - -# sphinx_gallery_thumbnail_number = 2 - -import matplotlib.pylab as pl -import ot -import ot.plot - -############################################################################## -# generate data -# ------------- - -n_samples_source = 150 -n_samples_target = 150 - -Xs, ys = ot.datasets.make_data_classif('3gauss', n_samples_source) -Xt, yt = ot.datasets.make_data_classif('3gauss2', n_samples_target) - -# Cost matrix -M = ot.dist(Xs, Xt, metric='sqeuclidean') - - -############################################################################## -# Instantiate the different transport algorithms and fit them -# ----------------------------------------------------------- - -# EMD Transport -ot_emd = ot.da.EMDTransport() -ot_emd.fit(Xs=Xs, Xt=Xt) - -# Sinkhorn Transport -ot_sinkhorn = ot.da.SinkhornTransport(reg_e=1e-1) -ot_sinkhorn.fit(Xs=Xs, Xt=Xt) - -# Sinkhorn Transport with Group lasso regularization -ot_lpl1 = ot.da.SinkhornLpl1Transport(reg_e=1e-1, reg_cl=1e0) -ot_lpl1.fit(Xs=Xs, ys=ys, Xt=Xt) - -# transport source samples onto target samples -transp_Xs_emd = ot_emd.transform(Xs=Xs) -transp_Xs_sinkhorn = ot_sinkhorn.transform(Xs=Xs) -transp_Xs_lpl1 = ot_lpl1.transform(Xs=Xs) - - -############################################################################## -# Fig 1 : plots source and target samples + matrix of pairwise distance -# --------------------------------------------------------------------- - -pl.figure(1, figsize=(10, 10)) -pl.subplot(2, 2, 1) -pl.scatter(Xs[:, 0], Xs[:, 1], c=ys, marker='+', label='Source samples') -pl.xticks([]) -pl.yticks([]) -pl.legend(loc=0) -pl.title('Source samples') - -pl.subplot(2, 2, 2) -pl.scatter(Xt[:, 0], Xt[:, 1], c=yt, marker='o', label='Target samples') -pl.xticks([]) -pl.yticks([]) -pl.legend(loc=0) -pl.title('Target samples') - -pl.subplot(2, 2, 3) -pl.imshow(M, interpolation='nearest') -pl.xticks([]) -pl.yticks([]) -pl.title('Matrix of pairwise distances') -pl.tight_layout() - - -############################################################################## -# Fig 2 : plots optimal couplings for the different methods -# --------------------------------------------------------- -pl.figure(2, figsize=(10, 6)) - -pl.subplot(2, 3, 1) -pl.imshow(ot_emd.coupling_, interpolation='nearest') -pl.xticks([]) -pl.yticks([]) -pl.title('Optimal coupling\nEMDTransport') - -pl.subplot(2, 3, 2) -pl.imshow(ot_sinkhorn.coupling_, interpolation='nearest') -pl.xticks([]) -pl.yticks([]) -pl.title('Optimal coupling\nSinkhornTransport') - -pl.subplot(2, 3, 3) -pl.imshow(ot_lpl1.coupling_, interpolation='nearest') -pl.xticks([]) -pl.yticks([]) -pl.title('Optimal coupling\nSinkhornLpl1Transport') - -pl.subplot(2, 3, 4) -ot.plot.plot2D_samples_mat(Xs, Xt, ot_emd.coupling_, c=[.5, .5, 1]) -pl.scatter(Xs[:, 0], Xs[:, 1], c=ys, marker='+', label='Source samples') -pl.scatter(Xt[:, 0], Xt[:, 1], c=yt, marker='o', label='Target samples') -pl.xticks([]) -pl.yticks([]) -pl.title('Main coupling coefficients\nEMDTransport') - -pl.subplot(2, 3, 5) -ot.plot.plot2D_samples_mat(Xs, Xt, ot_sinkhorn.coupling_, c=[.5, .5, 1]) -pl.scatter(Xs[:, 0], Xs[:, 1], c=ys, marker='+', label='Source samples') -pl.scatter(Xt[:, 0], Xt[:, 1], c=yt, marker='o', label='Target samples') -pl.xticks([]) -pl.yticks([]) -pl.title('Main coupling coefficients\nSinkhornTransport') - -pl.subplot(2, 3, 6) -ot.plot.plot2D_samples_mat(Xs, Xt, ot_lpl1.coupling_, c=[.5, .5, 1]) -pl.scatter(Xs[:, 0], Xs[:, 1], c=ys, marker='+', label='Source samples') -pl.scatter(Xt[:, 0], Xt[:, 1], c=yt, marker='o', label='Target samples') -pl.xticks([]) -pl.yticks([]) -pl.title('Main coupling coefficients\nSinkhornLpl1Transport') -pl.tight_layout() - - -############################################################################## -# Fig 3 : plot transported samples -# -------------------------------- - -# display transported samples -pl.figure(4, figsize=(10, 4)) -pl.subplot(1, 3, 1) -pl.scatter(Xt[:, 0], Xt[:, 1], c=yt, marker='o', - label='Target samples', alpha=0.5) -pl.scatter(transp_Xs_emd[:, 0], transp_Xs_emd[:, 1], c=ys, - marker='+', label='Transp samples', s=30) -pl.title('Transported samples\nEmdTransport') -pl.legend(loc=0) -pl.xticks([]) -pl.yticks([]) - -pl.subplot(1, 3, 2) -pl.scatter(Xt[:, 0], Xt[:, 1], c=yt, marker='o', - label='Target samples', alpha=0.5) -pl.scatter(transp_Xs_sinkhorn[:, 0], transp_Xs_sinkhorn[:, 1], c=ys, - marker='+', label='Transp samples', s=30) -pl.title('Transported samples\nSinkhornTransport') -pl.xticks([]) -pl.yticks([]) - -pl.subplot(1, 3, 3) -pl.scatter(Xt[:, 0], Xt[:, 1], c=yt, marker='o', - label='Target samples', alpha=0.5) -pl.scatter(transp_Xs_lpl1[:, 0], transp_Xs_lpl1[:, 1], c=ys, - marker='+', label='Transp samples', s=30) -pl.title('Transported samples\nSinkhornLpl1Transport') -pl.xticks([]) -pl.yticks([]) - -pl.tight_layout() -pl.show() -- cgit v1.2.3