# -*- coding: utf-8 -*- """ ==================== 1D optimal transport ==================== This example illustrates the computation of EMD and Sinkhorn transport plans and their visualization. """ # Author: Remi Flamary # # License: MIT License import numpy as np import matplotlib.pylab as pl import ot import ot.plot from ot.datasets import make_1D_gauss as gauss ############################################################################## # Generate data # ------------- #%% parameters n = 100 # nb bins # bin positions x = np.arange(n, dtype=np.float64) # Gaussian distributions a = gauss(n, m=20, s=5) # m= mean, s= std b = gauss(n, m=60, s=10) # loss matrix M = ot.dist(x.reshape((n, 1)), x.reshape((n, 1))) M /= M.max() ############################################################################## # Plot distributions and loss matrix # ---------------------------------- #%% plot the distributions pl.figure(1, figsize=(6.4, 3)) pl.plot(x, a, 'b', label='Source distribution') pl.plot(x, b, 'r', label='Target distribution') pl.legend() #%% plot distributions and loss matrix pl.figure(2, figsize=(5, 5)) ot.plot.plot1D_mat(a, b, M, 'Cost matrix M') ############################################################################## # Solve EMD # --------- #%% EMD G0 = ot.emd(a, b, M) pl.figure(3, figsize=(5, 5)) ot.plot.plot1D_mat(a, b, G0, 'OT matrix G0') ############################################################################## # Solve Sinkhorn # -------------- #%% Sinkhorn lambd = 1e-3 Gs = ot.sinkhorn(a, b, M, lambd, verbose=True) pl.figure(4, figsize=(5, 5)) ot.plot.plot1D_mat(a, b, Gs, 'OT matrix Sinkhorn') pl.show()