{ "cells": [ { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": false }, "outputs": [], "source": [ "%matplotlib inline" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "\n# OT for domain adaptation\n\n\nThis example introduces a domain adaptation in a 2D setting and the 4 OTDA\napproaches currently supported in POT.\n\n\n" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": false }, "outputs": [], "source": [ "# Authors: Remi Flamary \n# Stanislas Chambon \n#\n# License: MIT License\n\nimport matplotlib.pylab as pl\nimport ot" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "Generate data\n-------------\n\n" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": false }, "outputs": [], "source": [ "n_source_samples = 150\nn_target_samples = 150\n\nXs, ys = ot.datasets.make_data_classif('3gauss', n_source_samples)\nXt, yt = ot.datasets.make_data_classif('3gauss2', n_target_samples)" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "Instantiate the different transport algorithms and fit them\n-----------------------------------------------------------\n\n" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": false }, "outputs": [], "source": [ "# EMD Transport\not_emd = ot.da.EMDTransport()\not_emd.fit(Xs=Xs, Xt=Xt)\n\n# Sinkhorn Transport\not_sinkhorn = ot.da.SinkhornTransport(reg_e=1e-1)\not_sinkhorn.fit(Xs=Xs, Xt=Xt)\n\n# Sinkhorn Transport with Group lasso regularization\not_lpl1 = ot.da.SinkhornLpl1Transport(reg_e=1e-1, reg_cl=1e0)\not_lpl1.fit(Xs=Xs, ys=ys, Xt=Xt)\n\n# Sinkhorn Transport with Group lasso regularization l1l2\not_l1l2 = ot.da.SinkhornL1l2Transport(reg_e=1e-1, reg_cl=2e0, max_iter=20,\n verbose=True)\not_l1l2.fit(Xs=Xs, ys=ys, Xt=Xt)\n\n# transport source samples onto target samples\ntransp_Xs_emd = ot_emd.transform(Xs=Xs)\ntransp_Xs_sinkhorn = ot_sinkhorn.transform(Xs=Xs)\ntransp_Xs_lpl1 = ot_lpl1.transform(Xs=Xs)\ntransp_Xs_l1l2 = ot_l1l2.transform(Xs=Xs)" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "Fig 1 : plots source and target samples\n---------------------------------------\n\n" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": false }, "outputs": [], "source": [ "pl.figure(1, figsize=(10, 5))\npl.subplot(1, 2, 1)\npl.scatter(Xs[:, 0], Xs[:, 1], c=ys, marker='+', label='Source samples')\npl.xticks([])\npl.yticks([])\npl.legend(loc=0)\npl.title('Source samples')\n\npl.subplot(1, 2, 2)\npl.scatter(Xt[:, 0], Xt[:, 1], c=yt, marker='o', label='Target samples')\npl.xticks([])\npl.yticks([])\npl.legend(loc=0)\npl.title('Target samples')\npl.tight_layout()" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "Fig 2 : plot optimal couplings and transported samples\n------------------------------------------------------\n\n" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": false }, "outputs": [], "source": [ "param_img = {'interpolation': 'nearest'}\n\npl.figure(2, figsize=(15, 8))\npl.subplot(2, 4, 1)\npl.imshow(ot_emd.coupling_, **param_img)\npl.xticks([])\npl.yticks([])\npl.title('Optimal coupling\\nEMDTransport')\n\npl.subplot(2, 4, 2)\npl.imshow(ot_sinkhorn.coupling_, **param_img)\npl.xticks([])\npl.yticks([])\npl.title('Optimal coupling\\nSinkhornTransport')\n\npl.subplot(2, 4, 3)\npl.imshow(ot_lpl1.coupling_, **param_img)\npl.xticks([])\npl.yticks([])\npl.title('Optimal coupling\\nSinkhornLpl1Transport')\n\npl.subplot(2, 4, 4)\npl.imshow(ot_l1l2.coupling_, **param_img)\npl.xticks([])\npl.yticks([])\npl.title('Optimal coupling\\nSinkhornL1l2Transport')\n\npl.subplot(2, 4, 5)\npl.scatter(Xt[:, 0], Xt[:, 1], c=yt, marker='o',\n label='Target samples', alpha=0.3)\npl.scatter(transp_Xs_emd[:, 0], transp_Xs_emd[:, 1], c=ys,\n marker='+', label='Transp samples', s=30)\npl.xticks([])\npl.yticks([])\npl.title('Transported samples\\nEmdTransport')\npl.legend(loc=\"lower left\")\n\npl.subplot(2, 4, 6)\npl.scatter(Xt[:, 0], Xt[:, 1], c=yt, marker='o',\n label='Target samples', alpha=0.3)\npl.scatter(transp_Xs_sinkhorn[:, 0], transp_Xs_sinkhorn[:, 1], c=ys,\n marker='+', label='Transp samples', s=30)\npl.xticks([])\npl.yticks([])\npl.title('Transported samples\\nSinkhornTransport')\n\npl.subplot(2, 4, 7)\npl.scatter(Xt[:, 0], Xt[:, 1], c=yt, marker='o',\n label='Target samples', alpha=0.3)\npl.scatter(transp_Xs_lpl1[:, 0], transp_Xs_lpl1[:, 1], c=ys,\n marker='+', label='Transp samples', s=30)\npl.xticks([])\npl.yticks([])\npl.title('Transported samples\\nSinkhornLpl1Transport')\n\npl.subplot(2, 4, 8)\npl.scatter(Xt[:, 0], Xt[:, 1], c=yt, marker='o',\n label='Target samples', alpha=0.3)\npl.scatter(transp_Xs_l1l2[:, 0], transp_Xs_l1l2[:, 1], c=ys,\n marker='+', label='Transp samples', s=30)\npl.xticks([])\npl.yticks([])\npl.title('Transported samples\\nSinkhornL1l2Transport')\npl.tight_layout()\n\npl.show()" ] } ], "metadata": { "kernelspec": { "display_name": "Python 3", "language": "python", "name": "python3" }, "language_info": { "codemirror_mode": { "name": "ipython", "version": 3 }, "file_extension": ".py", "mimetype": "text/x-python", "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", "version": "3.6.5" } }, "nbformat": 4, "nbformat_minor": 0 }