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.. _sphx_glr_auto_examples_plot_OT_2D_samples.py:
====================================================
2D Optimal transport between empirical distributions
====================================================
@author: rflamary
.. rst-class:: sphx-glr-horizontal
*
.. image:: /auto_examples/images/sphx_glr_plot_OT_2D_samples_001.png
:scale: 47
*
.. image:: /auto_examples/images/sphx_glr_plot_OT_2D_samples_002.png
:scale: 47
*
.. image:: /auto_examples/images/sphx_glr_plot_OT_2D_samples_003.png
:scale: 47
*
.. image:: /auto_examples/images/sphx_glr_plot_OT_2D_samples_004.png
:scale: 47
*
.. image:: /auto_examples/images/sphx_glr_plot_OT_2D_samples_005.png
:scale: 47
*
.. image:: /auto_examples/images/sphx_glr_plot_OT_2D_samples_006.png
:scale: 47
.. rst-class:: sphx-glr-script-out
Out::
('Warning: numerical errors at iteration', 0)
|
.. code-block:: python
import numpy as np
import matplotlib.pylab as pl
import ot
#%% parameters and data generation
n=50 # nb samples
mu_s=np.array([0,0])
cov_s=np.array([[1,0],[0,1]])
mu_t=np.array([4,4])
cov_t=np.array([[1,-.8],[-.8,1]])
xs=ot.datasets.get_2D_samples_gauss(n,mu_s,cov_s)
xt=ot.datasets.get_2D_samples_gauss(n,mu_t,cov_t)
a,b = ot.unif(n),ot.unif(n) # uniform distribution on samples
# loss matrix
M=ot.dist(xs,xt)
M/=M.max()
#%% plot samples
pl.figure(1)
pl.plot(xs[:,0],xs[:,1],'+b',label='Source samples')
pl.plot(xt[:,0],xt[:,1],'xr',label='Target samples')
pl.legend(loc=0)
pl.title('Source and traget distributions')
pl.figure(2)
pl.imshow(M,interpolation='nearest')
pl.title('Cost matrix M')
#%% EMD
G0=ot.emd(a,b,M)
pl.figure(3)
pl.imshow(G0,interpolation='nearest')
pl.title('OT matrix G0')
pl.figure(4)
ot.plot.plot2D_samples_mat(xs,xt,G0,c=[.5,.5,1])
pl.plot(xs[:,0],xs[:,1],'+b',label='Source samples')
pl.plot(xt[:,0],xt[:,1],'xr',label='Target samples')
pl.legend(loc=0)
pl.title('OT matrix with samples')
#%% sinkhorn
# reg term
lambd=5e-4
Gs=ot.sinkhorn(a,b,M,lambd)
pl.figure(5)
pl.imshow(Gs,interpolation='nearest')
pl.title('OT matrix sinkhorn')
pl.figure(6)
ot.plot.plot2D_samples_mat(xs,xt,Gs,color=[.5,.5,1])
pl.plot(xs[:,0],xs[:,1],'+b',label='Source samples')
pl.plot(xt[:,0],xt[:,1],'xr',label='Target samples')
pl.legend(loc=0)
pl.title('OT matrix Sinkhorn with samples')
**Total running time of the script:** ( 0 minutes 0.623 seconds)
.. container:: sphx-glr-footer
.. container:: sphx-glr-download
:download:`Download Python source code: plot_OT_2D_samples.py <plot_OT_2D_samples.py>`
.. container:: sphx-glr-download
:download:`Download Jupyter notebook: plot_OT_2D_samples.ipynb <plot_OT_2D_samples.ipynb>`
.. rst-class:: sphx-glr-signature
`Generated by Sphinx-Gallery <http://sphinx-gallery.readthedocs.io>`_
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