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"""Tests for module COOT on OT """
# Author: Quang Huy Tran <quang-huy.tran@univ-ubs.fr>
#
# License: MIT License
import numpy as np
import ot
from ot.coot import co_optimal_transport as coot
from ot.coot import co_optimal_transport2 as coot2
import pytest
@pytest.mark.parametrize("verbose", [False, True, 1, 0])
def test_coot(nx, verbose):
n_samples = 60 # nb samples
mu_s = np.array([0, 0])
cov_s = np.array([[1, 0], [0, 1]])
xs = ot.datasets.make_2D_samples_gauss(
n_samples, mu_s, cov_s, random_state=4)
xt = xs[::-1].copy()
xs_nx = nx.from_numpy(xs)
xt_nx = nx.from_numpy(xt)
# test couplings
pi_sample, pi_feature = coot(X=xs, Y=xt, verbose=verbose)
pi_sample_nx, pi_feature_nx = coot(X=xs_nx, Y=xt_nx, verbose=verbose)
pi_sample_nx = nx.to_numpy(pi_sample_nx)
pi_feature_nx = nx.to_numpy(pi_feature_nx)
anti_id_sample = np.flipud(np.eye(n_samples, n_samples)) / n_samples
id_feature = np.eye(2, 2) / 2
np.testing.assert_allclose(pi_sample, anti_id_sample, atol=1e-04)
np.testing.assert_allclose(pi_sample_nx, anti_id_sample, atol=1e-04)
np.testing.assert_allclose(pi_feature, id_feature, atol=1e-04)
np.testing.assert_allclose(pi_feature_nx, id_feature, atol=1e-04)
# test marginal distributions
px_s, px_f = ot.unif(n_samples), ot.unif(2)
py_s, py_f = ot.unif(n_samples), ot.unif(2)
np.testing.assert_allclose(px_s, pi_sample_nx.sum(0), atol=1e-04)
np.testing.assert_allclose(py_s, pi_sample_nx.sum(1), atol=1e-04)
np.testing.assert_allclose(px_f, pi_feature_nx.sum(0), atol=1e-04)
np.testing.assert_allclose(py_f, pi_feature_nx.sum(1), atol=1e-04)
np.testing.assert_allclose(px_s, pi_sample.sum(0), atol=1e-04)
np.testing.assert_allclose(py_s, pi_sample.sum(1), atol=1e-04)
np.testing.assert_allclose(px_f, pi_feature.sum(0), atol=1e-04)
np.testing.assert_allclose(py_f, pi_feature.sum(1), atol=1e-04)
# test COOT distance
coot_np = coot2(X=xs, Y=xt, verbose=verbose)
coot_nx = nx.to_numpy(coot2(X=xs_nx, Y=xt_nx, verbose=verbose))
np.testing.assert_allclose(coot_np, 0, atol=1e-08)
np.testing.assert_allclose(coot_nx, 0, atol=1e-08)
def test_entropic_coot(nx):
n_samples = 60 # nb samples
mu_s = np.array([0, 0])
cov_s = np.array([[1, 0], [0, 1]])
xs = ot.datasets.make_2D_samples_gauss(
n_samples, mu_s, cov_s, random_state=4)
xt = xs[::-1].copy()
xs_nx = nx.from_numpy(xs)
xt_nx = nx.from_numpy(xt)
epsilon = (1, 1e-1)
nits_ot = 2000
# test couplings
pi_sample, pi_feature = coot(X=xs, Y=xt, epsilon=epsilon, nits_ot=nits_ot)
pi_sample_nx, pi_feature_nx = coot(
X=xs_nx, Y=xt_nx, epsilon=epsilon, nits_ot=nits_ot)
pi_sample_nx = nx.to_numpy(pi_sample_nx)
pi_feature_nx = nx.to_numpy(pi_feature_nx)
np.testing.assert_allclose(pi_sample, pi_sample_nx, atol=1e-04)
np.testing.assert_allclose(pi_feature, pi_feature_nx, atol=1e-04)
# test marginal distributions
px_s, px_f = ot.unif(n_samples), ot.unif(2)
py_s, py_f = ot.unif(n_samples), ot.unif(2)
np.testing.assert_allclose(px_s, pi_sample_nx.sum(0), atol=1e-04)
np.testing.assert_allclose(py_s, pi_sample_nx.sum(1), atol=1e-04)
np.testing.assert_allclose(px_f, pi_feature_nx.sum(0), atol=1e-04)
np.testing.assert_allclose(py_f, pi_feature_nx.sum(1), atol=1e-04)
np.testing.assert_allclose(px_s, pi_sample.sum(0), atol=1e-04)
np.testing.assert_allclose(py_s, pi_sample.sum(1), atol=1e-04)
np.testing.assert_allclose(px_f, pi_feature.sum(0), atol=1e-04)
np.testing.assert_allclose(py_f, pi_feature.sum(1), atol=1e-04)
# test entropic COOT distance
coot_np = coot2(X=xs, Y=xt, epsilon=epsilon, nits_ot=nits_ot)
coot_nx = nx.to_numpy(
coot2(X=xs_nx, Y=xt_nx, epsilon=epsilon, nits_ot=nits_ot))
np.testing.assert_allclose(coot_np, coot_nx, atol=1e-08)
def test_coot_with_linear_terms(nx):
n_samples = 60 # nb samples
mu_s = np.array([0, 0])
cov_s = np.array([[1, 0], [0, 1]])
xs = ot.datasets.make_2D_samples_gauss(
n_samples, mu_s, cov_s, random_state=4)
xt = xs[::-1].copy()
xs_nx = nx.from_numpy(xs)
xt_nx = nx.from_numpy(xt)
M_samp = np.ones((n_samples, n_samples))
np.fill_diagonal(np.fliplr(M_samp), 0)
M_feat = np.ones((2, 2))
np.fill_diagonal(M_feat, 0)
M_samp_nx, M_feat_nx = nx.from_numpy(M_samp), nx.from_numpy(M_feat)
alpha = (1, 2)
# test couplings
anti_id_sample = np.flipud(np.eye(n_samples, n_samples)) / n_samples
id_feature = np.eye(2, 2) / 2
pi_sample, pi_feature = coot(
X=xs, Y=xt, alpha=alpha, M_samp=M_samp, M_feat=M_feat)
pi_sample_nx, pi_feature_nx = coot(
X=xs_nx, Y=xt_nx, alpha=alpha, M_samp=M_samp_nx, M_feat=M_feat_nx)
pi_sample_nx = nx.to_numpy(pi_sample_nx)
pi_feature_nx = nx.to_numpy(pi_feature_nx)
np.testing.assert_allclose(pi_sample, anti_id_sample, atol=1e-04)
np.testing.assert_allclose(pi_sample_nx, anti_id_sample, atol=1e-04)
np.testing.assert_allclose(pi_feature, id_feature, atol=1e-04)
np.testing.assert_allclose(pi_feature_nx, id_feature, atol=1e-04)
# test marginal distributions
px_s, px_f = ot.unif(n_samples), ot.unif(2)
py_s, py_f = ot.unif(n_samples), ot.unif(2)
np.testing.assert_allclose(px_s, pi_sample_nx.sum(0), atol=1e-04)
np.testing.assert_allclose(py_s, pi_sample_nx.sum(1), atol=1e-04)
np.testing.assert_allclose(px_f, pi_feature_nx.sum(0), atol=1e-04)
np.testing.assert_allclose(py_f, pi_feature_nx.sum(1), atol=1e-04)
np.testing.assert_allclose(px_s, pi_sample.sum(0), atol=1e-04)
np.testing.assert_allclose(py_s, pi_sample.sum(1), atol=1e-04)
np.testing.assert_allclose(px_f, pi_feature.sum(0), atol=1e-04)
np.testing.assert_allclose(py_f, pi_feature.sum(1), atol=1e-04)
# test COOT distance
coot_np = coot2(X=xs, Y=xt, alpha=alpha, M_samp=M_samp, M_feat=M_feat)
coot_nx = nx.to_numpy(
coot2(X=xs_nx, Y=xt_nx, alpha=alpha, M_samp=M_samp_nx, M_feat=M_feat_nx))
np.testing.assert_allclose(coot_np, 0, atol=1e-08)
np.testing.assert_allclose(coot_nx, 0, atol=1e-08)
def test_coot_raise_value_error(nx):
n_samples = 80 # nb samples
mu_s = np.array([2, 4])
cov_s = np.array([[1, 0], [0, 1]])
xs = ot.datasets.make_2D_samples_gauss(
n_samples, mu_s, cov_s, random_state=43)
xt = xs[::-1].copy()
xs_nx = nx.from_numpy(xs)
xt_nx = nx.from_numpy(xt)
# raise value error of method sinkhorn
def coot_sh(method_sinkhorn):
return coot(X=xs, Y=xt, method_sinkhorn=method_sinkhorn)
def coot_sh_nx(method_sinkhorn):
return coot(X=xs_nx, Y=xt_nx, method_sinkhorn=method_sinkhorn)
np.testing.assert_raises(ValueError, coot_sh, "not_sinkhorn")
np.testing.assert_raises(ValueError, coot_sh_nx, "not_sinkhorn")
# raise value error for epsilon
def coot_eps(epsilon):
return coot(X=xs, Y=xt, epsilon=epsilon)
def coot_eps_nx(epsilon):
return coot(X=xs_nx, Y=xt_nx, epsilon=epsilon)
np.testing.assert_raises(ValueError, coot_eps, (1, 2, 3))
np.testing.assert_raises(ValueError, coot_eps_nx, [1, 2, 3, 4])
# raise value error for alpha
def coot_alpha(alpha):
return coot(X=xs, Y=xt, alpha=alpha)
def coot_alpha_nx(alpha):
return coot(X=xs_nx, Y=xt_nx, alpha=alpha)
np.testing.assert_raises(ValueError, coot_alpha, [1])
np.testing.assert_raises(ValueError, coot_alpha_nx, np.arange(4))
def test_coot_warmstart(nx):
n_samples = 80 # nb samples
mu_s = np.array([2, 3])
cov_s = np.array([[1, 0], [0, 1]])
xs = ot.datasets.make_2D_samples_gauss(
n_samples, mu_s, cov_s, random_state=125)
xt = xs[::-1].copy()
xs_nx = nx.from_numpy(xs)
xt_nx = nx.from_numpy(xt)
# initialize warmstart
init_pi_sample = np.random.rand(n_samples, n_samples)
init_pi_sample = init_pi_sample / np.sum(init_pi_sample)
init_pi_sample_nx = nx.from_numpy(init_pi_sample)
init_pi_feature = np.random.rand(2, 2)
init_pi_feature /= init_pi_feature / np.sum(init_pi_feature)
init_pi_feature_nx = nx.from_numpy(init_pi_feature)
init_duals_sample = (np.random.random(n_samples) * 2 - 1,
np.random.random(n_samples) * 2 - 1)
init_duals_sample_nx = (nx.from_numpy(init_duals_sample[0]),
nx.from_numpy(init_duals_sample[1]))
init_duals_feature = (np.random.random(2) * 2 - 1,
np.random.random(2) * 2 - 1)
init_duals_feature_nx = (nx.from_numpy(init_duals_feature[0]),
nx.from_numpy(init_duals_feature[1]))
warmstart = {
"pi_sample": init_pi_sample,
"pi_feature": init_pi_feature,
"duals_sample": init_duals_sample,
"duals_feature": init_duals_feature
}
warmstart_nx = {
"pi_sample": init_pi_sample_nx,
"pi_feature": init_pi_feature_nx,
"duals_sample": init_duals_sample_nx,
"duals_feature": init_duals_feature_nx
}
# test couplings
pi_sample, pi_feature = coot(X=xs, Y=xt, warmstart=warmstart)
pi_sample_nx, pi_feature_nx = coot(
X=xs_nx, Y=xt_nx, warmstart=warmstart_nx)
pi_sample_nx = nx.to_numpy(pi_sample_nx)
pi_feature_nx = nx.to_numpy(pi_feature_nx)
anti_id_sample = np.flipud(np.eye(n_samples, n_samples)) / n_samples
id_feature = np.eye(2, 2) / 2
np.testing.assert_allclose(pi_sample, anti_id_sample, atol=1e-04)
np.testing.assert_allclose(pi_sample_nx, anti_id_sample, atol=1e-04)
np.testing.assert_allclose(pi_feature, id_feature, atol=1e-04)
np.testing.assert_allclose(pi_feature_nx, id_feature, atol=1e-04)
# test marginal distributions
px_s, px_f = ot.unif(n_samples), ot.unif(2)
py_s, py_f = ot.unif(n_samples), ot.unif(2)
np.testing.assert_allclose(px_s, pi_sample_nx.sum(0), atol=1e-04)
np.testing.assert_allclose(py_s, pi_sample_nx.sum(1), atol=1e-04)
np.testing.assert_allclose(px_f, pi_feature_nx.sum(0), atol=1e-04)
np.testing.assert_allclose(py_f, pi_feature_nx.sum(1), atol=1e-04)
np.testing.assert_allclose(px_s, pi_sample.sum(0), atol=1e-04)
np.testing.assert_allclose(py_s, pi_sample.sum(1), atol=1e-04)
np.testing.assert_allclose(px_f, pi_feature.sum(0), atol=1e-04)
np.testing.assert_allclose(py_f, pi_feature.sum(1), atol=1e-04)
# test COOT distance
coot_np = coot2(X=xs, Y=xt, warmstart=warmstart)
coot_nx = nx.to_numpy(coot2(X=xs_nx, Y=xt_nx, warmstart=warmstart_nx))
np.testing.assert_allclose(coot_np, 0, atol=1e-08)
np.testing.assert_allclose(coot_nx, 0, atol=1e-08)
def test_coot_log(nx):
n_samples = 90 # nb samples
mu_s = np.array([-2, 0])
cov_s = np.array([[1, 0], [0, 1]])
xs = ot.datasets.make_2D_samples_gauss(
n_samples, mu_s, cov_s, random_state=43)
xt = xs[::-1].copy()
xs_nx = nx.from_numpy(xs)
xt_nx = nx.from_numpy(xt)
pi_sample, pi_feature, log = coot(X=xs, Y=xt, log=True)
pi_sample_nx, pi_feature_nx, log_nx = coot(X=xs_nx, Y=xt_nx, log=True)
duals_sample, duals_feature = log["duals_sample"], log["duals_feature"]
assert len(duals_sample) == 2
assert len(duals_feature) == 2
assert len(duals_sample[0]) == n_samples
assert len(duals_sample[1]) == n_samples
assert len(duals_feature[0]) == 2
assert len(duals_feature[1]) == 2
duals_sample_nx = log_nx["duals_sample"]
assert len(duals_sample_nx) == 2
assert len(duals_sample_nx[0]) == n_samples
assert len(duals_sample_nx[1]) == n_samples
duals_feature_nx = log_nx["duals_feature"]
assert len(duals_feature_nx) == 2
assert len(duals_feature_nx[0]) == 2
assert len(duals_feature_nx[1]) == 2
list_coot = log["distances"]
assert len(list_coot) >= 1
list_coot_nx = log_nx["distances"]
assert len(list_coot_nx) >= 1
# test with coot distance
coot_np, log = coot2(X=xs, Y=xt, log=True)
coot_nx, log_nx = coot2(X=xs_nx, Y=xt_nx, log=True)
duals_sample, duals_feature = log["duals_sample"], log["duals_feature"]
assert len(duals_sample) == 2
assert len(duals_feature) == 2
assert len(duals_sample[0]) == n_samples
assert len(duals_sample[1]) == n_samples
assert len(duals_feature[0]) == 2
assert len(duals_feature[1]) == 2
duals_sample_nx = log_nx["duals_sample"]
assert len(duals_sample_nx) == 2
assert len(duals_sample_nx[0]) == n_samples
assert len(duals_sample_nx[1]) == n_samples
duals_feature_nx = log_nx["duals_feature"]
assert len(duals_feature_nx) == 2
assert len(duals_feature_nx[0]) == 2
assert len(duals_feature_nx[1]) == 2
list_coot = log["distances"]
assert len(list_coot) >= 1
list_coot_nx = log_nx["distances"]
assert len(list_coot_nx) >= 1
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