diff options
| author | Mario Mulansky <mario.mulansky@gmx.net> | 2014-10-24 16:36:13 +0200 |
|---|---|---|
| committer | Mario Mulansky <mario.mulansky@gmx.net> | 2014-10-24 16:36:13 +0200 |
| commit | 8b5b287a79f3b42ddfefdf30ecf435f77306cfb8 (patch) | |
| tree | bc6d619bcd1ad8e8b372e1611c4032975ad60e8a | |
| parent | bc9cdee56fefa62b50415ac7e1f74b8d7af4992d (diff) | |
links to SPIKY and paper pdfs
| -rw-r--r-- | Readme.rst | 15 |
1 files changed, 9 insertions, 6 deletions
@@ -5,15 +5,17 @@ PySpike :target: https://travis-ci.org/mariomulansky/PySpike PySpike is a Python library for the numerical analysis of spike train similarity. -Its core functionality is the implementation of the bivariate ISI_ [#]_ and SPIKE_ [#]_ distance. +Its core functionality is the implementation of the bivariate ISI_ and SPIKE_ distance [#]_ [#]_. Additionally, it provides functions to compute multivariate SPIKE and ISI distances, as well as averaging and general spike train processing. All computation intensive parts are implemented in C via cython_ to reach a competitive performance (factor 100-200 over plain Python). +PySpike provides the same fundamental functionality as the SPIKY_ framework for Matlab, which additionally contains spike-train generators, more spike train distance measures and many visualization routines. + All source codes are published under the BSD_License_. -.. [#] Kreuz T, Haas JS, Morelli A, Abarbanel HDI, Politi A, *Measuring spike train synchrony.* J Neurosci Methods 165, 151 (2007) +.. [#] Kreuz T, Haas JS, Morelli A, Abarbanel HDI, Politi A, *Measuring spike train synchrony.* J Neurosci Methods 165, 151 (2007) `[pdf] <http://wwwold.fi.isc.cnr.it/users/thomas.kreuz/images/Kreuz_JNeurosciMethods_2007_Spike-Train-Synchrony.pdf>`_ -.. [#] Kreuz T, Chicharro D, Houghton C, Andrzejak RG, Mormann F, *Monitoring spike train synchrony.* J Neurophysiol 109, 1457 (2013) +.. [#] Kreuz T, Chicharro D, Houghton C, Andrzejak RG, Mormann F, *Monitoring spike train synchrony.* J Neurophysiol 109, 1457 (2013) `[pdf] <http://wwwold.fi.isc.cnr.it/users/thomas.kreuz/images/Kreuz_JNeurophysiol_2013_SPIKE-distance.pdf>`_ Requirements and Installation ----------------------------- @@ -254,9 +256,9 @@ The following example computes and plots the ISI- and SPIKE-distance matrix, whe =============================================================================== -`The work on PySpike was supported by the European Comission through the Marie -Curie Initial Training Network 'Neural Engineering Transformative Technologies -(NETT)' under the project number 289146.` +*The work on PySpike was supported by the European Comission through the Marie +Curie Initial Training Network* `Neural Engineering Transformative Technologies +(NETT) <http://www.neural-engineering.eu/>`_ *under the project number 289146.* **Python/C Programming:** @@ -270,4 +272,5 @@ Curie Initial Training Network 'Neural Engineering Transformative Technologies .. _ISI: http://www.scholarpedia.org/article/Measures_of_spike_train_synchrony#ISI-distance .. _SPIKE: http://www.scholarpedia.org/article/SPIKE-distance .. _cython: http://www.cython.org +.. _SPIKY: http://wwwold.fi.isc.cnr.it/users/thomas.kreuz/Source-Code/SPIKY.html .. _BSD_License: http://opensource.org/licenses/BSD-2-Clause |