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authorMario Mulansky <mario.mulansky@gmx.net>2014-10-23 12:48:19 +0200
committerMario Mulansky <mario.mulansky@gmx.net>2014-10-23 12:48:19 +0200
commitac8e9ca85a889ee2d9fe984d19976917ffdfea46 (patch)
tree6654e6270f49dc0ebb8e2780b06ca5d0b6650204 /examples
parent4a295e6045abc7564a2e72d1a2173bf2b04c5950 (diff)
+averaging example, removed empty averaging sec from docs
Diffstat (limited to 'examples')
-rw-r--r--examples/averages.py42
1 files changed, 42 insertions, 0 deletions
diff --git a/examples/averages.py b/examples/averages.py
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+""" averages.py
+
+Simple example showing how to compute averages of distance profiles
+
+Copyright 2014, Mario Mulansky <mario.mulansky@gmx.net>
+
+Distributed under the BSD License
+"""
+
+from __future__ import print_function
+
+import pyspike as spk
+
+spike_trains = spk.load_spike_trains_from_txt("PySpike_testdata.txt",
+ time_interval=(0, 4000))
+
+f = spk.isi_profile(spike_trains[0], spike_trains[1])
+
+print("ISI-distance: %.8f" % f.avrg())
+
+isi1 = f.avrg(interval=(0, 1000))
+isi2 = f.avrg(interval=(1000, 2000))
+isi3 = f.avrg(interval=(2000, 3000))
+isi4 = f.avrg(interval=(3000, 4000))
+
+print("ISI-distance (0-1000): %.8f" % isi1)
+print("ISI-distance (1000-2000): %.8f" % isi2)
+print("ISI-distance (2000-3000): %.8f" % isi3)
+print("ISI-distance (3000-4000): %.8f" % isi4)
+print()
+
+print("SPIKE-distance: %.8f" % f.avrg())
+
+spike1 = f.avrg(interval=(0, 1000))
+spike2 = f.avrg(interval=(1000, 2000))
+spike3 = f.avrg(interval=(2000, 3000))
+spike4 = f.avrg(interval=(3000, 4000))
+
+print("SPIKE-distance (0-1000): %.8f" % spike1)
+print("SPIKE-distance (1000-2000): %.8f" % spike2)
+print("SPIKE-distance (2000-3000): %.8f" % spike3)
+print("SPIKE-distance (3000-4000): %.8f" % spike4)