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Diffstat (limited to 'examples/distance_matrix.py')
-rw-r--r-- | examples/distance_matrix.py | 38 |
1 files changed, 38 insertions, 0 deletions
diff --git a/examples/distance_matrix.py b/examples/distance_matrix.py new file mode 100644 index 0000000..0e4d825 --- /dev/null +++ b/examples/distance_matrix.py @@ -0,0 +1,38 @@ +""" distance_matrix.py + +Simple example showing how to compute the isi distance matrix of a set of spike +trains. + +Copyright 2014, Mario Mulansky <mario.mulansky@gmx.net> + +Distributed under the BSD License +""" + + +from __future__ import print_function + +import matplotlib.pyplot as plt + +import pyspike as spk + +# first load the data, interval ending time = 4000, start=0 (default) +spike_trains = spk.load_spike_trains_from_txt("PySpike_testdata.txt", 4000) + +print(len(spike_trains)) + +plt.figure() +isi_distance = spk.isi_distance_matrix(spike_trains) +plt.imshow(isi_distance, interpolation='none') +plt.title("ISI-distance") + +plt.figure() +spike_distance = spk.spike_distance_matrix(spike_trains, interval=(0, 1000)) +plt.imshow(spike_distance, interpolation='none') +plt.title("SPIKE-distance, T=0-1000") + +plt.figure() +spike_sync = spk.spike_sync_matrix(spike_trains, interval=(2000, 4000)) +plt.imshow(spike_sync, interpolation='none') +plt.title("SPIKE-Sync, T=2000-4000") + +plt.show() |