diff options
Diffstat (limited to 'examples/test_data.py')
| -rw-r--r-- | examples/test_data.py | 11 |
1 files changed, 4 insertions, 7 deletions
diff --git a/examples/test_data.py b/examples/test_data.py index ff7b510..dcd0f20 100644 --- a/examples/test_data.py +++ b/examples/test_data.py @@ -7,17 +7,14 @@ import matplotlib.pyplot as plt import pyspike as spk -# first load the data -spike_trains = [] -spike_file = open("SPIKY_testdata.txt", 'r') -for line in spike_file: - spike_trains.append(spk.spike_train_from_string(line)) +spike_trains = spk.load_spike_trains_from_txt("SPIKY_testdata.txt", + time_interval=(0,4000)) # plot the spike time for (i,spikes) in enumerate(spike_trains): plt.plot(spikes, i*np.ones_like(spikes), 'o') -f = spk.isi_distance(spike_trains[0], spike_trains[1], 4000) +f = spk.isi_distance(spike_trains[0], spike_trains[1]) x, y = f.get_plottable_data() plt.figure() @@ -27,7 +24,7 @@ print("Average: %.8f" % f.avrg()) print("Absolute average: %.8f" % f.abs_avrg()) -f = spk.spike_distance(spike_trains[0], spike_trains[1], 4000) +f = spk.spike_distance(spike_trains[0], spike_trains[1]) x, y = f.get_plottable_data() print(x) print(y) |