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Diffstat (limited to 'pyspike/directionality/cython/directionality_python_backend.py')
-rw-r--r-- | pyspike/directionality/cython/directionality_python_backend.py | 89 |
1 files changed, 0 insertions, 89 deletions
diff --git a/pyspike/directionality/cython/directionality_python_backend.py b/pyspike/directionality/cython/directionality_python_backend.py deleted file mode 100644 index e14238f..0000000 --- a/pyspike/directionality/cython/directionality_python_backend.py +++ /dev/null @@ -1,89 +0,0 @@ -""" directionality_python_backend.py - -Collection of python functions that can be used instead of the cython -implementation. - -Copyright 2015, Mario Mulansky <mario.mulansky@gmx.net> - -Distributed under the BSD License - -""" - -import numpy as np - - -############################################################ -# spike_train_order_python -############################################################ -def spike_train_order_python(spikes1, spikes2, t_start, t_end, max_tau): - - def get_tau(spikes1, spikes2, i, j, max_tau): - m = t_end - t_start # use interval as initial tau - if i < len(spikes1)-1 and i > -1: - m = min(m, spikes1[i+1]-spikes1[i]) - if j < len(spikes2)-1 and j > -1: - m = min(m, spikes2[j+1]-spikes2[j]) - if i > 0: - m = min(m, spikes1[i]-spikes1[i-1]) - if j > 0: - m = min(m, spikes2[j]-spikes2[j-1]) - m *= 0.5 - if max_tau > 0.0: - m = min(m, max_tau) - return m - - N1 = len(spikes1) - N2 = len(spikes2) - i = -1 - j = -1 - n = 0 - st = np.zeros(N1 + N2 + 2) # spike times - a = np.zeros(N1 + N2 + 2) # coincidences - mp = np.ones(N1 + N2 + 2) # multiplicity - while i + j < N1 + N2 - 2: - if (i < N1-1) and (j == N2-1 or spikes1[i+1] < spikes2[j+1]): - i += 1 - n += 1 - tau = get_tau(spikes1, spikes2, i, j, max_tau) - st[n] = spikes1[i] - if j > -1 and spikes1[i]-spikes2[j] < tau: - # coincidence between the current spike and the previous spike - # both get marked with 1 - a[n] = -1 - a[n-1] = -1 - elif (j < N2-1) and (i == N1-1 or spikes1[i+1] > spikes2[j+1]): - j += 1 - n += 1 - tau = get_tau(spikes1, spikes2, i, j, max_tau) - st[n] = spikes2[j] - if i > -1 and spikes2[j]-spikes1[i] < tau: - # coincidence between the current spike and the previous spike - # both get marked with 1 - a[n] = 1 - a[n-1] = 1 - else: # spikes1[i+1] = spikes2[j+1] - # advance in both spike trains - j += 1 - i += 1 - n += 1 - # add only one event with zero asymmetry value and multiplicity 2 - st[n] = spikes1[i] - a[n] = 0 - mp[n] = 2 - - st = st[:n+2] - a = a[:n+2] - mp = mp[:n+2] - - st[0] = t_start - st[len(st)-1] = t_end - if N1 + N2 > 0: - a[0] = a[1] - a[len(a)-1] = a[len(a)-2] - mp[0] = mp[1] - mp[len(mp)-1] = mp[len(mp)-2] - else: - a[0] = 1 - a[1] = 1 - - return st, a, mp |